Cover Image

CRITERIA: A network decomposition and elementary flux mode translation-based tool for computing equilibria of biochemical systems

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Villejo, Exequiel Jun V., Reyes V, Aurelio A. de los, Hernandez, Bryan S.
Format:	Preprint
Published:	2026
Subjects:	Dynamical Systems
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Equilibria decomposition-based comparison of reaction networks of Wnt signaling
by: Hernandez, Bryan S., et al.
Published: (2023)

A decomposition-based approach for deriving positive steady states of a class of chemical reaction networks with non-mass-action kinetics
by: Hernandez, Bryan S., et al.
Published: (2023)

Positive steady states of a class of power law systems with independent decompositions
by: Alamin, Al Jay Lan J., et al.
Published: (2024)

The finest decompositions' architecture of a reaction network
by: Hernandez, Bryan S., et al.
Published: (2024)

mpbn: a simple tool for efficient edition and analysis of elementary properties of Boolean networks
by: Trinh, Van-Giang, et al.
Published: (2024)

McGehee blowup for Lagrangian systems and instability of equilibria
by: Burgos, J. M.
Published: (2025)

Improved stability estimates at elliptic equilibria of Hamiltonian systems
by: Guzzo, Massimiliano, et al.
Published: (2026)

Line zonotopes: A tool for state estimation and fault diagnosis of unbounded and descriptor systems
by: Rego, Brenner S., et al.
Published: (2023)

Embedding-based comparison of reaction networks of Wnt signaling
by: Hernandez, Bryan S., et al.
Published: (2024)

Relative equilibria, linear stability and electromagnetic curvature
by: Asselle, Luca, et al.
Published: (2026)

The stability of boundary equilibria of three-dimensional Filippov systems
by: Simpson, David J. W.
Published: (2026)

Dynamic mode decomposition as an analysis tool for time-dependent partial differential equations
by: Rot, Miha, et al.
Published: (2022)

The joint translation spectrum and Manhattan manifolds
by: Cantrell, Stephen, et al.
Published: (2024)

Smooth invariant foliations and Koopman eigenfunctions about stable equilibria of semiflows
by: Buza, Gergely
Published: (2024)

Data-driven model order reduction for structures with piecewise linear nonlinearity using dynamic mode decomposition
by: Saito, Akira, et al.
Published: (2026)

On the attractor in a high-dimensional neural network dynamics of reservoir computing: Lyapunov analysis viewpoint
by: Kobayashi, Miki U., et al.
Published: (2025)

Anti-circulant dynamic mode decomposition with sparsity-promoting for highway traffic dynamics analysis
by: Wang, Xudong, et al.
Published: (2023)

General multi-steps variable-coefficient formulation for computing quasi-periodic solutions with multiple base frequencies
by: Wu, Junqing, et al.
Published: (2025)

Structure and input-to-state stability for composable computations in chemical reaction networks
by: Jiang, Renlei, et al.
Published: (2025)

Efficient pseudometrics for data-driven comparisons of nonlinear dynamical systems
by: Glaz, Bryan
Published: (2024)

PyDMD: A Python package for robust dynamic mode decomposition
by: Ichinaga, Sara M., et al.
Published: (2024)

Simultaneous computation of whiskered tori and their whiskers in Hamiltonian systems using flow maps
by: Fernández-Mora, Álvaro, et al.
Published: (2025)

Beyond Boolean networks: new tools for the steady state analysis of multivalued networks
by: Galofre, J. García, et al.
Published: (2024)

Estimating unknown dynamics and cost as a bilinear system with Koopman-based Inverse Optimal Control
by: Fernandez-Ayala, Victor Nan, et al.
Published: (2025)

On computation of Darboux polynomials for full Toda lattice
by: Tsiganov, A. V.
Published: (2025)

Harnessing omnipresent oscillator networks as computational resource
by: de Jong, Thomas Geert, et al.
Published: (2025)

Symmetric relative equilibria with one dominant and four infinitesimal point vortices
by: Hoyer-Leitzel, Alanna, et al.
Published: (2020)

RKHS method for computing Koopman-based Lyapunov functions
by: Bierwart, François-Grégoire, et al.
Published: (2026)

Optimal control for a class of linear transport-dominated systems via the shifted proper orthogonal decomposition
by: Breiten, Tobias, et al.
Published: (2024)

Bayesian dynamic mode decomposition for real-time ship motion digital twinning
by: Palma, Giorgio, et al.
Published: (2024)

Exploring localization in nonlinear oscillator systems through network-based predictions
by: Geier, Charlotte, et al.
Published: (2024)

Effects of forward scattering on the onset of phototactic bioconvection in an algal suspension under diffuse flux without collimated flux
by: Rajput, S. K., et al.
Published: (2024)

Tremors and horocycle dynamics on the moduli space of translation surfaces
by: Chaika, Jon, et al.
Published: (2020)

Dichotomy for the Hausdorff dimension of nonergodic directions on translation surfaces
by: Wei, Yuming
Published: (2025)

Twisted homoclinic orbits in Lorenz and Chen systems: rigorous proofs from universal normal form
by: Belykh, Vladimir N., et al.
Published: (2025)

Learning dynamical systems with biochemically informed neural ordinary differential equations
by: Fonseca, Luis L., et al.
Published: (2026)

Structured stability analysis of networked systems with uncertain links
by: Mariano, Simone, et al.
Published: (2024)

Dynamical decomposition of generalized interval exchange transformations
by: Fougeron, Charles, et al.
Published: (2025)

Reviving networked multi-dimensional dynamical systems
by: Dong, Nan, et al.
Published: (2025)

Natural levels in return maps of elementary polycycles
by: Yeung, Melvin
Published: (2024)