Shaping nematic order in bacterial films with single-cell resolution patterning

Fuente: arXiv
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Auteurs principaux: Bec, Matthias Le, Martín, Guillem Pérez, Boggon, Cameron, Hu, Yiyao, Puggioni, Leonardo, Heydenreich, Rosa, Mathys, Alexander, Giomi, Luca, Secchi, Eleonora, Isa, Lucio
Format: Preprint
Publié: 2026
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author Bec, Matthias Le
Martín, Guillem Pérez
Boggon, Cameron
Hu, Yiyao
Puggioni, Leonardo
Heydenreich, Rosa
Mathys, Alexander
Giomi, Luca
Secchi, Eleonora
Isa, Lucio
author_facet Bec, Matthias Le
Martín, Guillem Pérez
Boggon, Cameron
Hu, Yiyao
Puggioni, Leonardo
Heydenreich, Rosa
Mathys, Alexander
Giomi, Luca
Secchi, Eleonora
Isa, Lucio
contents Bacterial colonies composed of elongated cells form active nematic fluids that spontaneously self-organise into ordered domains of aligned cells and exhibit self-generated chaotic flows powered by cell growth. While their dynamics have attracted significant attention, the role of initial conditions remains largely unexplored due to a lack of precise patterning methods. Here, we harness the precision of capillary assembly to pattern Bacillus subtilis endospores into arrays with controlled positions and orientations at single-cell resolution. Upon germination and growth of cell chains, we quantify the dynamics and morphologies of the resulting bacterial films. While orthogonally seeded spores lead to chaotic dynamics, seeding them with parallel orientations yields films with high nematic order across millimetres, which subsequently synchronously buckle upon further growth. Our observations are captured by numerical simulations and a model that describes the buckling dynamics starting from the mechanical properties of individual filaments. By programming local cell orientation with single-cell precision, we finally harness nematic alignment to create macroscopic bacterial films with local optical anisotropy, via structural colouration and light polarisation. Our findings demonstrate that initial conditions play a key role and offer exciting opportunities to control the spatio-temporal organization of bacterial assemblies towards addressing open biological questions and realizing living materials with tailored properties.
format Preprint
id arxiv_https___arxiv_org_abs_2604_21655
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Shaping nematic order in bacterial films with single-cell resolution patterning
Bec, Matthias Le
Martín, Guillem Pérez
Boggon, Cameron
Hu, Yiyao
Puggioni, Leonardo
Heydenreich, Rosa
Mathys, Alexander
Giomi, Luca
Secchi, Eleonora
Isa, Lucio
Biological Physics
Soft Condensed Matter
Cell Behavior
Bacterial colonies composed of elongated cells form active nematic fluids that spontaneously self-organise into ordered domains of aligned cells and exhibit self-generated chaotic flows powered by cell growth. While their dynamics have attracted significant attention, the role of initial conditions remains largely unexplored due to a lack of precise patterning methods. Here, we harness the precision of capillary assembly to pattern Bacillus subtilis endospores into arrays with controlled positions and orientations at single-cell resolution. Upon germination and growth of cell chains, we quantify the dynamics and morphologies of the resulting bacterial films. While orthogonally seeded spores lead to chaotic dynamics, seeding them with parallel orientations yields films with high nematic order across millimetres, which subsequently synchronously buckle upon further growth. Our observations are captured by numerical simulations and a model that describes the buckling dynamics starting from the mechanical properties of individual filaments. By programming local cell orientation with single-cell precision, we finally harness nematic alignment to create macroscopic bacterial films with local optical anisotropy, via structural colouration and light polarisation. Our findings demonstrate that initial conditions play a key role and offer exciting opportunities to control the spatio-temporal organization of bacterial assemblies towards addressing open biological questions and realizing living materials with tailored properties.
title Shaping nematic order in bacterial films with single-cell resolution patterning
topic Biological Physics
Soft Condensed Matter
Cell Behavior
url https://arxiv.org/abs/2604.21655