Leveraging Spatial Transcriptomics as Alternative to Manual Annotations for Deep Learning-Based Nuclei Analysis
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arXiv
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| Main Authors: | Nishimura, Kazuya, Bise, Ryoma, Hirose, Haruka, Kojima, Yasuhiro |
|---|---|
| Format: | Preprint |
| Published: |
2026
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| Subjects: | |
| Online Access: | |
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