:: Library Catalog

Cover Image

Saved in:

Bibliographic Details
Main Authors:	Cui, Yan, Leiby, Jacob S., Lei, Wenhui, Kim, Dokyoon, Deng, Yanxiang, Mayer, Aaron T., Wu, Zhenqin, Trevino, Alexandro E., Huang, Zhi
Format:	Preprint
Published:	2026
Subjects:	Machine Learning Computer Vision and Pattern Recognition Quantitative Methods
Online Access:	https://arxiv.org/abs/2605.00925
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Unleashing the power of computational insights in revealing the complexity of biological systems in the new era of spatial multi-omics
by: Fan, Zhiwei, et al.
Published: (2025)

Categorization of 33 computational methods to detect spatially variable genes from spatially resolved transcriptomics data
by: Yan, Guanao, et al.
Published: (2024)

RAFT-UP: Robust Alignment for Spatial Transcriptomics with Explicit Control of Spatial Distortion
by: Wu, Yaqi, et al.
Published: (2026)

TopSpace: spatial topic modeling for unsupervised discovery of multicellular spatial tissue structures in multiplex imaging
by: Choi, Junsouk, et al.
Published: (2025)

Abstract relational structures in models of biology
by: Diaz, Léo, et al.
Published: (2026)

EasyVitessce: auto-magically adding interactivity to Scverse single-cell and spatial biology plots
by: Luo, Selena, et al.
Published: (2025)

Association of normalization, non-differentially expressed genes and data source with machine learning performance in intra-dataset or cross-dataset modelling of transcriptomic and clinical data
by: Deng, Fei, et al.
Published: (2025)

A co-evolving agentic AI system for medical imaging analysis
by: Li, Songhao, et al.
Published: (2025)

Data-driven discovery of dynamical models in biology
by: Prokop, Bartosz, et al.
Published: (2025)

Quantitative assessment of biological dynamics with aggregate data
by: McCoy, Stephen, et al.
Published: (2025)

MOSAIC: Codon Harmonization of Monte Carlo-Based Simulated Annealing for Linked Codons in Heterologous Protein Expression
by: Jeong, Yoonho, et al.
Published: (2025)

PRAXIS: Case-distilled and code-verified AI agents for biological research
by: Ma, Zhenyu, et al.
Published: (2026)

Increasing certainty in systems biology models using Bayesian multimodel inference
by: Linden-Santangeli, Nathaniel, et al.
Published: (2024)

A whole-body mathematical model of cholesterol metabolism and transport
by: Carstensen, Peter Emil, et al.
Published: (2024)

Methods for quantifying self-organization in biology: a forward-looking survey and tutorial
by: Volkening, Alexandria
Published: (2024)

Lightning-fast adaptive immune receptor similarity search by symmetric deletion lookup
by: Chotisorayuth, Touchchai, et al.
Published: (2024)

Pathology-genomic fusion via biologically informed cross-modality graph learning for survival analysis
by: Zhang, Zeyu, et al.
Published: (2024)

SimAQ: Mitigating Experimental Artifacts in Soft X-Ray Tomography using Simulated Acquisitions
by: Egebjerg, Jacob, et al.
Published: (2025)

Multimodal contrastive learning for spatial gene expression prediction using histology images
by: Min, Wenwen, et al.
Published: (2024)

Computational modelling of biological systems now and then: revisiting tools and visions from the beginning of the century
by: Loewe, Axel, et al.
Published: (2025)

Forecasting and predicting stochastic agent-based model data with biologically-informed neural networks
by: Nardini, John T.
Published: (2023)

Network nestedness in primates: a structural constraint or a biological advantage of social complexity?
by: Herbrich, Maxime, et al.
Published: (2024)

Inverse resolution of spatially varying diffusion coefficient using Physics-Informed neural networks
by: Thakur, Sukirt, et al.
Published: (2024)

Contextualizing biological perturbation experiments through language
by: Wu, Menghua, et al.
Published: (2025)

SBMLtoOdin and Menelmacar: Interactive visualisation of systems biology models for expert and non-expert audiences
by: Lorenz, Leonie J., et al.
Published: (2025)

The structure is the message: preserving experimental context through tensor decomposition
by: Tan, Zhixin Cyrillus, et al.
Published: (2024)

Dynamical network stability analysis of multiple biological ages provides a framework for understanding the aging process
by: Pridham, Glen, et al.
Published: (2023)

EMERALD-UI: An interactive web application to unveil novel protein biology hidden in the suboptimal-alignment space
by: Preoteasa, Andrei, et al.
Published: (2026)

Modeling principles for a physiology-based whole-body model of human metabolism
by: Blicher, Laura Hjort, et al.
Published: (2024)

Apparent Selection Pressure for Dynamic Range and Channel Capacity in Bacterial Chemotactic Sensors
by: Cui, Ziyi, et al.
Published: (2026)

easyplater: The easy way to generate microplate designs deconvolved from multivariate clinical data
by: Taylor, Avigail, et al.
Published: (2025)

The temperature affects the impact levels of synthetic insecticides on a parasitoid wasp used in the biological control of pentatomid pests in soybean crops
by: Rakes, Matheus, et al.
Published: (2024)

RNA-Protein Interaction Prediction Based on Deep Learning: A Comprehensive Survey
by: Li, Danyu, et al.
Published: (2024)

On the consistent and scalable detection of spatial patterns
by: Su, Jiayu, et al.
Published: (2026)

Investigation of Electrical Conductivity Changes during Brain Functional Activity in 3T MRI
by: Jung, Kyu-Jin, et al.
Published: (2024)

CIBRA identifies genomic alterations with a system-wide impact on tumor biology
by: Lakbir, Soufyan, et al.
Published: (2024)

Mathematical modeling of heterogeneous stem cell regeneration: from cell division to Waddington's epigenetic landscape
by: Lei, Jinzhi
Published: (2023)

Random feature baselines provide distributional performance and feature selection benchmarks for clinical and 'omic machine learning
by: Ellis, Randall J., et al.
Published: (2024)

Quest for a clinically relevant medical image segmentation metric: the definition and implementation of Medical Similarity Index
by: Fazekas, Szuzina, et al.
Published: (2025)

Robustness and resilience of dynamical networks in biology and epidemiology
by: Proverbio, Daniele, et al.
Published: (2025)