Inferring Phylogenetic Networks from Required and Forbidden LCA-Constraints
Fuente:
arXiv
Saved in:
| Main Authors: | Ebert, Patricia A., Hellmuth, Marc |
|---|---|
| Format: | Preprint |
| Published: |
2026
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Simplifying and Characterizing DAGs and Phylogenetic Networks via Least Common Ancestor Constraints
by: Lindeberg, Anna, et al.
Published: (2024)
by: Lindeberg, Anna, et al.
Published: (2024)
Orthology and Near-Cographs in the Context of Phylogenetic Networks
by: Lindeberg, Anna, et al.
Published: (2025)
by: Lindeberg, Anna, et al.
Published: (2025)
Weighted Food Webs Make Computing Phylogenetic Diversity So Much Harder
by: Schestag, Jannik
Published: (2025)
by: Schestag, Jannik
Published: (2025)
Spaces of ranked tree-child networks
by: Moulton, Vincent, et al.
Published: (2024)
by: Moulton, Vincent, et al.
Published: (2024)
The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees
by: Sánchez, Alitzel López, et al.
Published: (2024)
by: Sánchez, Alitzel López, et al.
Published: (2024)
Embedding phylogenetic trees in networks of low treewidth
by: van Iersel, Leo, et al.
Published: (2022)
by: van Iersel, Leo, et al.
Published: (2022)
Exponential Steepest Ascent from Valued Constraint Graphs of Pathwidth Four
by: Kaznatcheev, Artem, et al.
Published: (2024)
by: Kaznatcheev, Artem, et al.
Published: (2024)
Galled Perfect Transfer Networks
by: Sánchez, Alitzel López, et al.
Published: (2024)
by: Sánchez, Alitzel López, et al.
Published: (2024)
Non-Spatial Hash Chemistry as a Minimalistic Open-Ended Evolutionary System
by: Sayama, Hiroki
Published: (2024)
by: Sayama, Hiroki
Published: (2024)
When is local search both effective and efficient?
by: Kaznatcheev, Artem, et al.
Published: (2024)
by: Kaznatcheev, Artem, et al.
Published: (2024)
Inferring DAGs and Phylogenetic Networks from Least Common Ancestors
by: Lindeberg, Anna, et al.
Published: (2025)
by: Lindeberg, Anna, et al.
Published: (2025)
Characterizing and Transforming DAGs within the I-LCA Framework
by: Hellmuth, Marc, et al.
Published: (2024)
by: Hellmuth, Marc, et al.
Published: (2024)
Local search for valued constraint satisfaction parameterized by treedepth
by: Kaznatcheev, Artem
Published: (2024)
by: Kaznatcheev, Artem
Published: (2024)
Recognizing Level-k-Based Phylogenetic Networks is NP-Complete
by: Suzuki, Takatora
Published: (2026)
by: Suzuki, Takatora
Published: (2026)
Subtree Distances, Tight Spans and Diversities
by: Bryant, David, et al.
Published: (2025)
by: Bryant, David, et al.
Published: (2025)
The weighted total cophenetic index: A novel balance index for phylogenetic networks
by: Knüver, Linda, et al.
Published: (2023)
by: Knüver, Linda, et al.
Published: (2023)
Group-Based Phylogenetic Models on 3-Sunlet Networks
by: Cox, Shelby, et al.
Published: (2024)
by: Cox, Shelby, et al.
Published: (2024)
Bounds on the Treewidth of Level-k Rooted Phylogenetic Networks
by: Markin, Alexey, et al.
Published: (2024)
by: Markin, Alexey, et al.
Published: (2024)
Spatio-temporal Moran dynamics in continuous media
by: Gorgi, Melika, et al.
Published: (2025)
by: Gorgi, Melika, et al.
Published: (2025)
Modeling Epidemics with Memory Effects: an Open Quantum System Approach
by: Bagarello, Fabio, et al.
Published: (2025)
by: Bagarello, Fabio, et al.
Published: (2025)
A nonconservative kinetic framework with logistic growth for modeling the coexistence in a multi-species ecological system
by: Menale, Marco, et al.
Published: (2025)
by: Menale, Marco, et al.
Published: (2025)
The invariance and non-decreasing expectation of an evolutionary path characteristic under weak selection
by: Yu, Yun-Yun, et al.
Published: (2025)
by: Yu, Yun-Yun, et al.
Published: (2025)
An age-structured diffusive model for epidemic modelling: Lie symmetries and exact solutions
by: Cherniha, Roman, et al.
Published: (2024)
by: Cherniha, Roman, et al.
Published: (2024)
Modeling and Inferring Metacommunity Dynamics with Maximum Caliber
by: Jackson, Zachary, et al.
Published: (2025)
by: Jackson, Zachary, et al.
Published: (2025)
Distinguishing Phylogenetic Level-2 Networks with Quartets and Inter-Taxon Quartet Distances
by: Holtgrefe, Niels, et al.
Published: (2025)
by: Holtgrefe, Niels, et al.
Published: (2025)
Estimation of Phylogenetic Tree using Gene Sequencing Data
by: Rafiuddin, S M
Published: (2025)
by: Rafiuddin, S M
Published: (2025)
Treemble: A Graphical Tool to Generate Newick Strings from Phylogenetic Tree Images
by: Allard, John B., et al.
Published: (2025)
by: Allard, John B., et al.
Published: (2025)
Network Representation and Modular Decomposition of Combinatorial Structures: A Galled-Tree Perspective
by: Lindeberg, Anna, et al.
Published: (2024)
by: Lindeberg, Anna, et al.
Published: (2024)
On the Approximation of Phylogenetic Distance Functions by Artificial Neural Networks
by: Rosenzweig, Benjamin K., et al.
Published: (2025)
by: Rosenzweig, Benjamin K., et al.
Published: (2025)
ARTreeFormer: A Faster Attention-based Autoregressive Model for Phylogenetic Inference
by: Xie, Tianyu, et al.
Published: (2025)
by: Xie, Tianyu, et al.
Published: (2025)
Tropical Logistic Regression Model on Space of Phylogenetic Trees
by: Aliatimis, Georgios, et al.
Published: (2023)
by: Aliatimis, Georgios, et al.
Published: (2023)
PhyloFrame: A DataFrame-based Library for Fast, Flexible Phylogenetic Computation
by: Moreno, Matthew Andres, et al.
Published: (2026)
by: Moreno, Matthew Andres, et al.
Published: (2026)
Order-Dependent Dissimilarity Measures on Phylogenetic Trees
by: Linz, Simone, et al.
Published: (2025)
by: Linz, Simone, et al.
Published: (2025)
PhyloProfile v2: Scalable Exploration of Multilayered Phylogenetic Profiles via Dimensionality Reduction
by: Tran, Vinh, et al.
Published: (2025)
by: Tran, Vinh, et al.
Published: (2025)
IdentityByDescentDispersal.jl: Inferring dispersal rates with identity-by-descent blocks
by: Jiménez, Francisco Campuzano, et al.
Published: (2025)
by: Jiménez, Francisco Campuzano, et al.
Published: (2025)
Phylogenetic least squares estimation without genetic distances
by: Chi, Peter B., et al.
Published: (2023)
by: Chi, Peter B., et al.
Published: (2023)
Phylogenetic network classes through the lens of expanding covers
by: Francis, Andrew, et al.
Published: (2023)
by: Francis, Andrew, et al.
Published: (2023)
Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian
by: Bhatt, Samir, et al.
Published: (2025)
by: Bhatt, Samir, et al.
Published: (2025)
Which Phylogenetic Networks are Level-k Networks with Additional Arcs? Structure and Algorithms
by: Suzuki, Takatora, et al.
Published: (2025)
by: Suzuki, Takatora, et al.
Published: (2025)
Metagenomic Analysis using Phylogenetic Placement -- A Review of the First Decade
by: Czech, Lucas, et al.
Published: (2022)
by: Czech, Lucas, et al.
Published: (2022)
Similar Items
-
Simplifying and Characterizing DAGs and Phylogenetic Networks via Least Common Ancestor Constraints
by: Lindeberg, Anna, et al.
Published: (2024) -
Orthology and Near-Cographs in the Context of Phylogenetic Networks
by: Lindeberg, Anna, et al.
Published: (2025) -
Weighted Food Webs Make Computing Phylogenetic Diversity So Much Harder
by: Schestag, Jannik
Published: (2025) -
Spaces of ranked tree-child networks
by: Moulton, Vincent, et al.
Published: (2024) -
The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees
by: Sánchez, Alitzel López, et al.
Published: (2024)