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| Natura: | Preprint |
| Pubblicazione: |
2026
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| Accesso online: | https://arxiv.org/abs/2605.07035 |
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| _version_ | 1866910200249712640 |
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| author | Ishida, Takeshi |
| author_facet | Ishida, Takeshi |
| contents | A central challenge in the origin of life is understanding how catalytic peptide-like polymers and information-bearing nucleic acid-like polymers emerged as an interde-pendent system. This study constructs a primordial cognitive model incorporating two internal Lotka-Volterra chemical oscillators to investigate, through simulation, whether a catalytic loop, primordial tRNAs, and nucleic acids that record and amplify them, can form through the interaction of polymers represented by binary (0/1) sequences. In this model, a mechanism was introduced where the synthesis of internal oscillations pro-vides a temporal bias for 0/1 selection during polymer elongation, while generated functional sequences are protected, recorded, and re-amplified. Simulation results demonstrated that the proposed cognitive model significantly outperformed a contrast model based on random 0/1 selection in terms of the establishment rate of catalytic loops, the accumulation of functional molecules, polymer elongation, and the reduction of Shannon entropy in sequence distribution. Furthermore, this superiority was generally maintained across sensitivity analyses, including batch calculations with different ran-dom seeds. While this study is a computational model based on abstract binary se-quences and simplified translation/replication rules rather than a direct reconstruction of life's origin, it provides a working hypothesis for the interdependent emergence of catalytic function and information retention by demonstrating that internal oscillations can bias sequence exploration within a framework linking autocatalytic networks, re-cording, and group selection. Future research must verify the generality and empirical validity of this framework by expanding monomer types, evolving into multi-oscillator systems, and establishing correspondences with compartmentalized experimental sys-tems. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2605_07035 |
| institution | arXiv |
| publishDate | 2026 |
| record_format | arxiv |
| spellingShingle | Genetic Information as a "Chord" of Chemical Oscillations: Emergence of Catalyst-RNA Systems Driven by Superposed Rhythms Ishida, Takeshi Other Quantitative Biology Emerging Technologies A central challenge in the origin of life is understanding how catalytic peptide-like polymers and information-bearing nucleic acid-like polymers emerged as an interde-pendent system. This study constructs a primordial cognitive model incorporating two internal Lotka-Volterra chemical oscillators to investigate, through simulation, whether a catalytic loop, primordial tRNAs, and nucleic acids that record and amplify them, can form through the interaction of polymers represented by binary (0/1) sequences. In this model, a mechanism was introduced where the synthesis of internal oscillations pro-vides a temporal bias for 0/1 selection during polymer elongation, while generated functional sequences are protected, recorded, and re-amplified. Simulation results demonstrated that the proposed cognitive model significantly outperformed a contrast model based on random 0/1 selection in terms of the establishment rate of catalytic loops, the accumulation of functional molecules, polymer elongation, and the reduction of Shannon entropy in sequence distribution. Furthermore, this superiority was generally maintained across sensitivity analyses, including batch calculations with different ran-dom seeds. While this study is a computational model based on abstract binary se-quences and simplified translation/replication rules rather than a direct reconstruction of life's origin, it provides a working hypothesis for the interdependent emergence of catalytic function and information retention by demonstrating that internal oscillations can bias sequence exploration within a framework linking autocatalytic networks, re-cording, and group selection. Future research must verify the generality and empirical validity of this framework by expanding monomer types, evolving into multi-oscillator systems, and establishing correspondences with compartmentalized experimental sys-tems. |
| title | Genetic Information as a "Chord" of Chemical Oscillations: Emergence of Catalyst-RNA Systems Driven by Superposed Rhythms |
| topic | Other Quantitative Biology Emerging Technologies |
| url | https://arxiv.org/abs/2605.07035 |