CA-DEL: An Open Multi-Target, Multi-Modal Benchmark for Learning from DNA-Encoded Library Screens
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arXiv
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| Main Authors: | He, Mutian, Cao, Hanqun, Tan, Cheng, Gao, Zijun, Yao, Xiaojun, Gu, Chunbin, Heng, Pheng-Ann |
|---|---|
| Format: | Preprint |
| Published: |
2026
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| Subjects: | |
| Online Access: | |
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