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Main Authors: Lohse, Christopher, Dhir, Anish, Ba, Amadou, Eck, Bradley, Ruffini, Marco, Wahl, Jonas
Format: Preprint
Published: 2026
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Online Access:https://arxiv.org/abs/2605.08786
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author Lohse, Christopher
Dhir, Anish
Ba, Amadou
Eck, Bradley
Ruffini, Marco
Wahl, Jonas
author_facet Lohse, Christopher
Dhir, Anish
Ba, Amadou
Eck, Bradley
Ruffini, Marco
Wahl, Jonas
contents Root cause analysis (RCA) in complex systems is challenging due to error propagation across multiple variables, the need for structural causal knowledge, and the computational cost of inference at test time. We introduce PRIM (Prior-fitted Root cause Identification with Meta-learning), a causal meta-learning approach that frames RCA as a Bayesian inference task over a synthetic prior of causal models. By marginalising out structural uncertainty, PRIM implicitly identifies changes in the data-generating mechanism between baseline and anomalous periods. In doing so, PRIM infers distributional differences without explicit statistical testing, and implicitly learns causal structure without model fitting at test time. Following the simulation-based meta-learning paradigm of prior-fitted networks, PRIM uses a Model-Averaged Causal Estimation (MACE) transformer neural process that jointly attends over observational and anomalous samples and the causal structure of nodes, enabling zero-shot inference in 17,ms for systems with up to 100 variables. Across synthetic benchmarks and two realistic benchmark datasets, PetShop and CausRCA, PRIM is competitive with methods that are aware of the system's causal graphical structure a priori while outperforming graph-unaware methods on several tasks. Lightweight fine-tuning to specific domains and data dynamics improves performance further.
format Preprint
id arxiv_https___arxiv_org_abs_2605_08786
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle PRIM: Meta-Learned Bayesian Root Cause Analysis
Lohse, Christopher
Dhir, Anish
Ba, Amadou
Eck, Bradley
Ruffini, Marco
Wahl, Jonas
Machine Learning
Root cause analysis (RCA) in complex systems is challenging due to error propagation across multiple variables, the need for structural causal knowledge, and the computational cost of inference at test time. We introduce PRIM (Prior-fitted Root cause Identification with Meta-learning), a causal meta-learning approach that frames RCA as a Bayesian inference task over a synthetic prior of causal models. By marginalising out structural uncertainty, PRIM implicitly identifies changes in the data-generating mechanism between baseline and anomalous periods. In doing so, PRIM infers distributional differences without explicit statistical testing, and implicitly learns causal structure without model fitting at test time. Following the simulation-based meta-learning paradigm of prior-fitted networks, PRIM uses a Model-Averaged Causal Estimation (MACE) transformer neural process that jointly attends over observational and anomalous samples and the causal structure of nodes, enabling zero-shot inference in 17,ms for systems with up to 100 variables. Across synthetic benchmarks and two realistic benchmark datasets, PetShop and CausRCA, PRIM is competitive with methods that are aware of the system's causal graphical structure a priori while outperforming graph-unaware methods on several tasks. Lightweight fine-tuning to specific domains and data dynamics improves performance further.
title PRIM: Meta-Learned Bayesian Root Cause Analysis
topic Machine Learning
url https://arxiv.org/abs/2605.08786