Cover Image

A putative, computationally stable structure of homotrimeric BP180/collagen XVII

Fuente: arXiv

Saved in:

Bibliographic Details
Main Author:	Sha, Congzhou M
Format:	Preprint
Published:	2026
Subjects:	Biomolecules Biological Physics Computational Physics Quantitative Methods
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Impact of phylogeny on structural contact inference from protein sequence data
by: Dietler, Nicola, et al.
Published: (2022)

AI-predicted protein deformation encodes energy landscape
by: Mcbride, John M, et al.
Published: (2023)

KnotResolver: Tracking self-intersecting filaments in microscopy using directed graphs
by: Khatri, Dhruv, et al.
Published: (2024)

Integrating experimental feedback improves generative models for biological sequences
by: Calvanese, Francesco, et al.
Published: (2025)

Insights into the role of dynamical features in protein complex formation: the case of SARS-CoV-2 spike binding with ACE2
by: Grassmann, Greta, et al.
Published: (2025)

Computational predictions of nutrient precipitation for intensified cell 1 culture media via amino acid solution thermodynamics
by: Reddy, Jayanth Venkatarama, et al.
Published: (2025)

Universal Cold RNA Phase Transitions
by: Rissone, Paolo, et al.
Published: (2024)

Molecular dynamics simulations with grand-canonical reweighting suggest cooperativity effects in RNA structure probing experiments
by: Calonaci, Nicola, et al.
Published: (2022)

A Unified Intracellular pH Landscape with SITE-pHorin: a Quantum-Entanglement-Enhanced pH Probe
by: Li, Shu-Ang, et al.
Published: (2024)

Impact of phylogeny on the inference of functional sectors from protein sequence data
by: Dietler, Nicola, et al.
Published: (2024)

Frustration In Physiology And Molecular Medicine
by: Parra, R. Gonzalo, et al.
Published: (2025)

LinearAlifold: Linear-Time Consensus Structure Prediction for RNA Alignments
by: Malik, Apoorv, et al.
Published: (2022)

LinearPartition: Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
by: Zhang, He, et al.
Published: (2019)

Scalable Spatio-Temporal SE(3) Diffusion for Long-Horizon Protein Dynamics
by: Shoghi, Nima, et al.
Published: (2026)

ConfRover: Simultaneous Modeling of Protein Conformation and Dynamics via Autoregression
by: Shen, Yuning, et al.
Published: (2025)

Designing the Haystack: Programmable Chemical Space for Generative Molecular Discovery
by: Zhu, Yuchen, et al.
Published: (2026)

AntiFold: Improved antibody structure-based design using inverse folding
by: Høie, Magnus Haraldson, et al.
Published: (2024)

Benchmarking structure-based three-dimensional molecular generative models using GenBench3D: ligand conformation quality matters
by: Baillif, Benoit, et al.
Published: (2024)

ProtSCAPE: Mapping the landscape of protein conformations in molecular dynamics
by: Viswanath, Siddharth, et al.
Published: (2024)

From Static to Dynamic Structures: Improving Binding Affinity Prediction with Graph-Based Deep Learning
by: Min, Yaosen, et al.
Published: (2022)

QSAR-Guided Generative Framework for the Discovery of Synthetically Viable Odorants
by: Pearce, Tim C., et al.
Published: (2025)

Quantifying the uncertainty of molecular dynamics simulations : Good-Turing statistics revisited
by: Tsampazi, Vasiliki, et al.
Published: (2026)

LAFA: A Framework for Reproducible Longitudinal Assessment of Protein Function Annotation Models
by: Phan, An, et al.
Published: (2026)

Frequency-Space Mechanics: A Sequence and Coordinate-Free Representation for Protein Function Prediction
by: Reilly, Charles B
Published: (2026)

Scoring-Assisted Generative Exploration for Proteins (SAGE-Prot): A Framework for Multi-Objective Protein Optimization via Iterative Sequence Generation and Evaluation
by: Lim, Hocheol, et al.
Published: (2025)

Towards a Unified Framework for Determining Conformational Ensembles of Disordered Proteins
by: Ghafouri, Hamidreza, et al.
Published: (2025)

GoForth: Language Models for RNA Design under Structure, Sequence, and Coding Constraints
by: Lindsey, Michael
Published: (2026)

Network Pharmacology Framework Characterizes Polypharmacological Properties of Dietary Flavonoids: Integration of Computational, Experimental, and Epidemiological Evidence
by: Fujisaki, Koyo, et al.
Published: (2026)

Conformational landscapes in cryo-ET data based on MD simulations
by: Jonic, Slavica
Published: (2026)

Non-perturbative Bacterial Identification Directly from Solid Agar Plates Using Raman
by: Kim, Jeong Hee, et al.
Published: (2026)

VARIANT: Web Server for Decoding and Analyzing Viral Mutations at Genome and Protein Levels
by: Wang, Rui, et al.
Published: (2026)

Benchmarking open-source tools for in silico antiviral drug discovery
by: Elton, Daniel C., et al.
Published: (2026)

Protein folding classes -- High-dimensional geometry of amino acid composition space revisited
by: Mao, Boryeu
Published: (2025)

Explainable Machine Learning and Deep Learning Models for Predicting TAS2R-Bitter Molecule Interactions
by: Ferri, Francesco, et al.
Published: (2024)

Canonicalization of the E value from BLAST similarity search -- dissimilarity measure and distance function for a metric space of protein sequences
by: Mao, Boryeu
Published: (2025)

HelixVS: Deep Learning-Enhanced Structure-Based Platform for Screening and Design
by: Zhang, Shanzhuo, et al.
Published: (2025)

EscalNet: Learn isotropic representation space for biomolecular dynamics based on effective energy
by: Zuo, Guanghong
Published: (2025)

Persistent Sheaf Laplacian Analysis of Protein Flexibility
by: Hayes, Nicole, et al.
Published: (2025)

Raman Spectroscopy Reveals Photobiomodulation-Induced α-Helix to β-Sheet Transition in Tubulins: Potential Implications for Alzheimer's and Other Neurodegenerative Diseases
by: Di Gregorio, Elisabetta, et al.
Published: (2023)

mRNA Folding Algorithms for Structure and Codon Optimization
by: Ward, Max, et al.
Published: (2025)