Clin-JEPA: A Multi-Phase Co-Training Framework for Joint-Embedding Predictive Pretraining on EHR Patient Trajectories
Fuente:
arXiv
Saved in:
| Main Authors: | Yang, Yixuan, Arora, Mehak, Zhang, Ryan, Abed, Baraa, Kim, Junseob, Choudhary, Tilendra, Hassanuzzaman, Md, Zhu, Kevin, Ali, Ayman, Yang, Chengkun, Gent, Alasdair Edward, Moas, Victor, Kamaleswaran, Rishikesan |
|---|---|
| Format: | Preprint |
| Published: |
2026
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
SpikGPT: A High-Accuracy and Interpretable Spiking Attention Framework for Single-Cell Annotation
by: Huang, Min, et al.
Published: (2025)
by: Huang, Min, et al.
Published: (2025)
Deep Representation Learning-Based Dynamic Trajectory Phenotyping for Acute Respiratory Failure in Medical Intensive Care Units
by: Wu, Alan, et al.
Published: (2024)
by: Wu, Alan, et al.
Published: (2024)
CXR-TFT: Multi-Modal Temporal Fusion Transformer for Predicting Chest X-ray Trajectories
by: Arora, Mehak, et al.
Published: (2025)
by: Arora, Mehak, et al.
Published: (2025)
Beyond the Clinic: A Large-Scale Evaluation of Augmenting EHR with Wearable Data for Diverse Health Prediction
by: Wang, Will Ke, et al.
Published: (2025)
by: Wang, Will Ke, et al.
Published: (2025)
Contextual Phenotyping of Pediatric Sepsis Cohort Using Large Language Models
by: Nagori, Aditya, et al.
Published: (2025)
by: Nagori, Aditya, et al.
Published: (2025)
Align Your Structures: Generating Trajectories with Structure Pretraining for Molecular Dynamics
by: Iyengar, Aniketh, et al.
Published: (2026)
by: Iyengar, Aniketh, et al.
Published: (2026)
A Joint Survival Modeling and Therapy Knowledge Graph Framework to Characterize Opioid Use Disorder Trajectories
by: Wei, Mengman, et al.
Published: (2026)
by: Wei, Mengman, et al.
Published: (2026)
Toward Scalable Early Cancer Detection: Evaluating EHR-Based Predictive Models Against Traditional Screening Criteria
by: Park, Jiheum, et al.
Published: (2025)
by: Park, Jiheum, et al.
Published: (2025)
Integrating Genomics into Multimodal EHR Foundation Models
by: Amar, Jonathan, et al.
Published: (2025)
by: Amar, Jonathan, et al.
Published: (2025)
Nationwide EHR-Based Chronic Rhinosinusitis Prediction Using Demographic-Stratified Models
by: Chang, Sicong, et al.
Published: (2026)
by: Chang, Sicong, et al.
Published: (2026)
Isotropy and Geometry of Pretrained Protein LMs
by: Hakim, Sheikh Azizul, et al.
Published: (2025)
by: Hakim, Sheikh Azizul, et al.
Published: (2025)
Geometric Self-Supervised Pretraining on 3D Protein Structures using Subgraphs
by: Chatzianastasis, Michail, et al.
Published: (2024)
by: Chatzianastasis, Michail, et al.
Published: (2024)
Building the EHR Foundation Model via Next Event Prediction
by: Chen, Zekai, et al.
Published: (2025)
by: Chen, Zekai, et al.
Published: (2025)
RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records
by: Xu, Ran, et al.
Published: (2024)
by: Xu, Ran, et al.
Published: (2024)
Enhancing EHR Systems with data from wearables: An end-to-end Solution for monitoring post-Surgical Symptoms in older adults
by: Sun, Heng, et al.
Published: (2024)
by: Sun, Heng, et al.
Published: (2024)
Improving Clinical Decision Support through Interpretable Machine Learning and Error Handling in Electronic Health Records
by: Arora, Mehak, et al.
Published: (2023)
by: Arora, Mehak, et al.
Published: (2023)
Beyond Black Boxes: Enhancing Interpretability of Transformers Trained on Neural Data
by: Freeman, Laurence, et al.
Published: (2025)
by: Freeman, Laurence, et al.
Published: (2025)
Protein Representation Learning with Sequence Information Embedding: Does it Always Lead to a Better Performance?
by: Tan, Yang, et al.
Published: (2024)
by: Tan, Yang, et al.
Published: (2024)
Data-Efficient Sleep Staging with Synthetic Time Series Pretraining
by: Grieger, Niklas, et al.
Published: (2024)
by: Grieger, Niklas, et al.
Published: (2024)
Arnold: a generalist muscle transformer policy
by: Chiappa, Alberto Silvio, et al.
Published: (2025)
by: Chiappa, Alberto Silvio, et al.
Published: (2025)
Single-Trajectory Bayesian Modeling Reveals Multi-State Diffusion of the MSH Sliding Clamp
by: Park, Seongyu, et al.
Published: (2025)
by: Park, Seongyu, et al.
Published: (2025)
Protein Fold Classification at Scale: Benchmarking and Pretraining
by: Chen, Dexiong, et al.
Published: (2026)
by: Chen, Dexiong, et al.
Published: (2026)
Zero-Shot Learning with Subsequence Reordering Pretraining for Compound-Protein Interaction
by: Zhang, Hongzhi, et al.
Published: (2025)
by: Zhang, Hongzhi, et al.
Published: (2025)
Deciphering Cell Systems: Machine Learning Perspectives And Approaches For The Analysis Of Single-Cell Data
by: Yang, Yongjian
Published: (2024)
by: Yang, Yongjian
Published: (2024)
A Graph Completion Method that Jointly Predicts Geometry and Topology Enables Effective Molecule Assembly
by: Koodli, Rohan V., et al.
Published: (2025)
by: Koodli, Rohan V., et al.
Published: (2025)
Evaluating Deep Surrogate Models for Knee Joint Contact Mechanics Under Input-Limited Conditions
by: Pan, Zhengye, et al.
Published: (2026)
by: Pan, Zhengye, et al.
Published: (2026)
The Patient is not a Moving Document: A World Model Training Paradigm for Longitudinal EHR
by: Adam, Irsyad, et al.
Published: (2026)
by: Adam, Irsyad, et al.
Published: (2026)
JESTR: Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data
by: Kalia, Apurva, et al.
Published: (2024)
by: Kalia, Apurva, et al.
Published: (2024)
ChemAU: Harness the Reasoning of LLMs in Chemical Research with Adaptive Uncertainty Estimation
by: Liu, Xinyi, et al.
Published: (2025)
by: Liu, Xinyi, et al.
Published: (2025)
Ankh3: Multi-Task Pretraining with Sequence Denoising and Completion Enhances Protein Representations
by: Alsamkary, Hazem, et al.
Published: (2025)
by: Alsamkary, Hazem, et al.
Published: (2025)
Patterns in Individual Blood Count Trajectories in the UK Biobank Characterise Disease-Specific Signatures and Anticipate Pan-Cancer Risk
by: Nagar, Riya, et al.
Published: (2026)
by: Nagar, Riya, et al.
Published: (2026)
Direct Evidence of Apex-Hypha Interactions During Vegetative Growth of Fungal Thallus via Comprehensive Network and Trajectory Extraction
by: Chassereau, Thibault, et al.
Published: (2025)
by: Chassereau, Thibault, et al.
Published: (2025)
Complexity-Informed Causal Modeling of Neurodevelopmental Trajectories in Pediatric High-Grade Gliomas: Divergences from Neural Stem Cell Signatures
by: Uthamacumaran, Abicumaran, et al.
Published: (2025)
by: Uthamacumaran, Abicumaran, et al.
Published: (2025)
ProtT-Affinity: Sequence-Based Protein-Protein Binding Affinity Prediction Using ProtT5 Embeddings
by: Lou, Hongfu
Published: (2025)
by: Lou, Hongfu
Published: (2025)
Enhancing Antimicrobial Molecule Prediction via Dynamic Routing Capsule Networks and Multi-Source Molecular Embeddings
by: He, R.
Published: (2025)
by: He, R.
Published: (2025)
Automated Protein Motif Localization using Concept Activation Vectors in Protein Language Model Embedding Space
by: Shamail, Ahmad, et al.
Published: (2025)
by: Shamail, Ahmad, et al.
Published: (2025)
Self-supervised Pretraining of Cell Segmentation Models
by: Stillwagon, Kaden, et al.
Published: (2026)
by: Stillwagon, Kaden, et al.
Published: (2026)
Deep Learning for Blood-Brain Barrier Permeability Prediction: From Discriminative Models to Mechanism-Aware Design
by: Yang, Zihan, et al.
Published: (2025)
by: Yang, Zihan, et al.
Published: (2025)
A DNA-Centric Mechanism for Protein Targeting in 6mA Methylation
by: Yang, Li, et al.
Published: (2025)
by: Yang, Li, et al.
Published: (2025)
Leveraging Protein Language Model Embeddings for Catalytic Turnover Prediction of Adenylate Kinase Orthologs in a Low-Data Regime
by: Muir, Duncan F., et al.
Published: (2025)
by: Muir, Duncan F., et al.
Published: (2025)
Similar Items
-
SpikGPT: A High-Accuracy and Interpretable Spiking Attention Framework for Single-Cell Annotation
by: Huang, Min, et al.
Published: (2025) -
Deep Representation Learning-Based Dynamic Trajectory Phenotyping for Acute Respiratory Failure in Medical Intensive Care Units
by: Wu, Alan, et al.
Published: (2024) -
CXR-TFT: Multi-Modal Temporal Fusion Transformer for Predicting Chest X-ray Trajectories
by: Arora, Mehak, et al.
Published: (2025) -
Beyond the Clinic: A Large-Scale Evaluation of Augmenting EHR with Wearable Data for Diverse Health Prediction
by: Wang, Will Ke, et al.
Published: (2025) -
Contextual Phenotyping of Pediatric Sepsis Cohort Using Large Language Models
by: Nagori, Aditya, et al.
Published: (2025)