:: Library Catalog

Cover Image

Saved in:

Bibliographic Details
Main Author:	Banu, Bogdan
Format:	Preprint
Published:	2026
Subjects:	Quantitative Methods Artificial Intelligence
Online Access:	https://arxiv.org/abs/2605.15225
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Pharmacology Knowledge Graphs: Do We Need Chemical Structure for Drug Repurposing?
by: Abo-Dahab, Youssef, et al.
Published: (2026)

Scalable Agentic Reasoning for Designing Biologics Targeting Intrinsically Disordered Proteins
by: Sinclair, Matthew, et al.
Published: (2025)

Empowering Chemical Structures with Biological Insights for Scalable Phenotypic Virtual Screening
by: Lian, Xiaoqing, et al.
Published: (2026)

BixBench: a Comprehensive Benchmark for LLM-based Agents in Computational Biology
by: Mitchener, Ludovico, et al.
Published: (2025)

Can Large Language Models Design Biological Weapons? Evaluating Moremi Bio
by: Hattoh, Gertrude, et al.
Published: (2025)

Literature Mining System for Nutraceutical Biosynthesis: From AI Framework to Biological Insight
by: Sun, Xinyang, et al.
Published: (2025)

A Multimodal Foundation Model of Spatial Transcriptomics and Histology for Biological Discovery and Clinical Prediction
by: Xiang, Jinxi, et al.
Published: (2026)

CBINNS: Cancer Biology-Informed Neural Network for Unknown Parameter Estimation and Missing Physics Identification
by: Chhetri, Bishal, et al.
Published: (2025)

Structure-based Drug Design Benchmark: Do 3D Methods Really Dominate?
by: Zheng, Kangyu, et al.
Published: (2024)

Integrating Deep Learning and Synthetic Biology: A Co-Design Approach for Enhancing Gene Expression via N-terminal Coding Sequences
by: Yan, Zhanglu, et al.
Published: (2024)

CellVerse: Do Large Language Models Really Understand Cell Biology?
by: Zhang, Fan, et al.
Published: (2025)

Protein Structure Tokenization via Geometric Byte Pair Encoding
by: Sun, Michael, et al.
Published: (2025)

GTR-CoT: Graph Traversal as Visual Chain of Thought for Molecular Structure Recognition
by: Wang, Jingchao, et al.
Published: (2025)

LLMs Outperform Experts on Challenging Biology Benchmarks
by: Justen, Lennart
Published: (2025)

CROP: Integrating Topological and Spatial Structures via Cross-View Prefixes for Molecular LLMs
by: Tang, Jianting, et al.
Published: (2025)

MAT-Cell: A Multi-Agent Tree-Structured Reasoning Framework for Batch-Level Single-Cell Annotation
by: Yang, Yehui, et al.
Published: (2026)

BioArc: Discovering Optimal Neural Architectures for Biological Foundation Models
by: Fang, Yi, et al.
Published: (2025)

BioMaze: Benchmarking and Enhancing Large Language Models for Biological Pathway Reasoning
by: Zhao, Haiteng, et al.
Published: (2025)

Injecting Hierarchical Biological Priors into Graph Neural Networks for Flow Cytometry Prediction
by: Mojarrad, Fatemeh Nassajian, et al.
Published: (2024)

Self-Improvement Imitation with Biologically Guided Search for Protein Design Under Oracle Budgets
by: Khanna, Ashima, et al.
Published: (2026)

Cell-cell Communication Inference and Analysis: Biological Mechanisms, Computational Approaches, and Future Opportunities
by: Cheng, Xiangzheng, et al.
Published: (2025)

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning
by: Caranzano, Isabella, et al.
Published: (2025)

Leveraging Large Language Models to Predict Antibody Biological Activity Against Influenza A Hemagglutinin
by: Barkan, Ella, et al.
Published: (2025)

Sample-Efficient Adaptation of Drug-Response Models to Patient Tumors under Strong Biological Domain Shift
by: Cortes, Camille Jimenez, et al.
Published: (2026)

Distilling and Adapting: A Topology-Aware Framework for Zero-Shot Interaction Prediction in Multiplex Biological Networks
by: Deng, Alana, et al.
Published: (2026)

Toward AI-Driven Digital Organism: Multiscale Foundation Models for Predicting, Simulating and Programming Biology at All Levels
by: Song, Le, et al.
Published: (2024)

BioMARS: A Multi-Agent Robotic System for Autonomous Biological Experiments
by: Qiu, Yibo, et al.
Published: (2025)

Hashing for Protein Structure Similarity Search
by: Han, Jin, et al.
Published: (2024)

Protein Structure Tokenization: Benchmarking and New Recipe
by: Yuan, Xinyu, et al.
Published: (2025)

Dynamics-inspired Structure Hallucination for Protein-protein Interaction Modeling
by: Wu, Fang, et al.
Published: (2026)

DCFold: Efficient Protein Structure Generation with Single Forward Pass
by: Zhang, Zhe, et al.
Published: (2026)

Benchmarking Preprocessing and Integration Methods in Single-Cell Genomics
by: Anaissi, Ali, et al.
Published: (2026)

Mamba-SSM with LLM Reasoning for Feature Selection: Faithfulness-Aware Biomarker Discovery
by: Balan, Pushpa Kumar, et al.
Published: (2026)

ViroGym: Realistic Large-Scale Benchmarks for Evaluating Viral Proteins
by: Zhou, Yichen, et al.
Published: (2026)

A Universal Space of Brain Dynamics for Unveiling Cognitive Transitions and Individual Differences
by: Zheng, Ronghua, et al.
Published: (2026)

Learning the Interaction Prior for Protein-Protein Interaction Prediction: A Model-Agnostic Approach
by: Gao, Ziqi, et al.
Published: (2026)

Toward Auditable Neuro-Symbolic Reasoning in Pathology: SQL as an Explicit Trace of Evidence
by: Cao, Kewen, et al.
Published: (2026)

Contextual Invertible World Models: A Neuro-Symbolic Agentic Framework for Colorectal Cancer Drug Response
by: Baker, Christopher, et al.
Published: (2026)

ProtoCycle: Reflective Tool-Augmented Planning for Text-Guided Protein Design
by: Ge, Yutang, et al.
Published: (2026)

ToxReason: A Benchmark for Mechanistic Chemical Toxicity Reasoning via Adverse Outcome Pathway
by: Park, Jueon, et al.
Published: (2026)