Weisfeiler-Leman Is Incomplete on Simple Spectrum Graphs, so Canonicalize Them

Fuente: arXiv
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Main Authors: Hordan, Snir, Dym, Nadav, Seppelt, Tim
Format: Preprint
Published: 2026
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author Hordan, Snir
Dym, Nadav
Seppelt, Tim
author_facet Hordan, Snir
Dym, Nadav
Seppelt, Tim
contents Graphs with a simple spectrum admit cubic-time isomorphism testing, yet we prove that for every natural number $k$, the $k$-Weisfeiler-Leman ($k$-WL) test cannot distinguish all non-isomorphic graphs with a simple spectrum. As the WL hierarchy upper-bounds the distinguishing power of widely-used Graph Neural Networks (GNNs), this incompleteness applies to all such GNNs, ruling out completeness for every $k$-WL-aligned GNN family. To close this gap, we introduce PRiSM (Partition, Refine, Solve, Match), the first provably complete canonicalization of simple-spectrum eigendecompositions. PRiSM obtains the completeness guarantee that prior canonicalizations provably lack, and resolves the open problem of achieving complete expressivity on simple-spectrum graphs. When composed with DeepSets or a Transformer, PRiSM achieves universal approximation on simple-spectrum graphs, justifying the use of canonicalized Laplacian positional encodings. Empirically, PRiSM performs comparably to or outperforms existing spectral canonicalizations on graph regression, classification, and expressivity
format Preprint
id arxiv_https___arxiv_org_abs_2605_23446
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle Weisfeiler-Leman Is Incomplete on Simple Spectrum Graphs, so Canonicalize Them
Hordan, Snir
Dym, Nadav
Seppelt, Tim
Machine Learning
Combinatorics
Graphs with a simple spectrum admit cubic-time isomorphism testing, yet we prove that for every natural number $k$, the $k$-Weisfeiler-Leman ($k$-WL) test cannot distinguish all non-isomorphic graphs with a simple spectrum. As the WL hierarchy upper-bounds the distinguishing power of widely-used Graph Neural Networks (GNNs), this incompleteness applies to all such GNNs, ruling out completeness for every $k$-WL-aligned GNN family. To close this gap, we introduce PRiSM (Partition, Refine, Solve, Match), the first provably complete canonicalization of simple-spectrum eigendecompositions. PRiSM obtains the completeness guarantee that prior canonicalizations provably lack, and resolves the open problem of achieving complete expressivity on simple-spectrum graphs. When composed with DeepSets or a Transformer, PRiSM achieves universal approximation on simple-spectrum graphs, justifying the use of canonicalized Laplacian positional encodings. Empirically, PRiSM performs comparably to or outperforms existing spectral canonicalizations on graph regression, classification, and expressivity
title Weisfeiler-Leman Is Incomplete on Simple Spectrum Graphs, so Canonicalize Them
topic Machine Learning
Combinatorics
url https://arxiv.org/abs/2605.23446