Cover Image

C3P: Contrastive promoter-protein pretraining yields representations capturing bacterial gene regulation

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Dufault, Cameron, Xu, Scott, Moses, Alan M.
Format:	Preprint
Published:	2026
Subjects:	Genomics
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Introgression of genes associated with yield enhancement and resistance against bacterial leaf blight and blast diseases into an elite rice variety, Jaya
by: G. D. Dileep Kumar, et al.
Published: (2025)

Allelism of Rps3b and Rps11 revealed by NLR gene capture of resistance genes to Phytophthora sojae in soybean
by: Yanick Asselin, et al.
Published: (2025)

Annotation of protein-coding genes in 49 diatom genomes from the Bacillariophyta clade
by: Nenasheva, Natalia, et al.
Published: (2024)

Genomic and phenomic prediction for soybean seed yield, protein, and oil
by: Liza Van der Laan, et al.
Published: (2025)

Fine mapping and functional analysis of the candidate gene OFP17 , regulating both seed and fruit sizes in cotton
by: Min Xu, et al.
Published: (2026)

Genome‐wide exploration of bacterial leaf blight resistance and fine mapping of major resistance gene ( Bb13 ) in upland cotton ( Gossypium hirsutum L.)
by: Spoorti S. Gandhadmath, et al.
Published: (2026)

Phytocytokine genes newly discovered in Malus domestica and their regulation in response to Erwinia amylovora and acibenzolar‐S‐methyl
by: Marie‐Charlotte Guillou, et al.
Published: (2024)

Functional characterization of protein SUMOylation in the miRNA transcription regulation during heat stress in Arabidopsis
by: Simin Xia, et al.
Published: (2024)

Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
by: Louvel, Guillaume, et al.
Published: (2024)

Genomic‐wide analysis reveals seven in absentia genes regulating grain development in wheat ( Triticum aestivum L.)
by: Tao Chen, et al.
Published: (2024)

Genetic and functional variants of the TBX20 gene promoter in dilated cardiomyopathy
by: Xue Gao, et al.
Published: (2024)

Exploring the efficacy of phenomic and genomic selection for yield and fruit quality traits in strawberry
by: Joshua A. Sleper, et al.
Published: (2025)

Predicting cell-specific gene expression profile and knockout impact through deep learning
by: He, Yongjian, et al.
Published: (2025)

Exploring gene content with pangene graphs
by: Li, Heng, et al.
Published: (2024)

Genome‐wide association analysis to identify QTLs and candidate genes associated with grain yield and its related traits under low light conditions in rice ( Oryza sativa L.)
by: Swagatika Das, et al.
Published: (2026)

Use of 3D chaos game representation to quantify DNA sequence similarity with applications for hierarchical clustering
by: Young, Stephanie, et al.
Published: (2024)

Functional analysis of PagERF021 gene in salt stress tolerance in Populus alba × P. glandulosa
by: Gaofeng Fan, et al.
Published: (2024)

Mutations in the dwarf3 gene confer height stability in sorghum
by: Elisabeth Diatta‐Holgate, et al.
Published: (2024)

Identification and genomic location of resistance to bacterial leaf streak of barley
by: Diel Donne Velasco, et al.
Published: (2026)

Correction to “Identification of the sweet orange ( Citrus sinensis ) bHLH gene family and the role of CsbHLH55 and CsbHLH87 in regulating salt stress”
Published: (2025)

Integrating GWAS with a gene co‐expression network better prioritizes candidate genes associated with root metaxylem phenes in maize
by: Stephanie P. Klein, et al.
Published: (2024)

Identifying genes associated with phenotypes using machine and deep learning
by: Muneeb, Muhammad, et al.
Published: (2026)

Approximating a gene regulatory network from non-sequential data
by: Stein, Cliff, et al.
Published: (2024)

Gene mapping and candidate gene analysis of a sorghum sheathed panicle‐I mutant
by: Jianling Ao, et al.
Published: (2025)

Accurate and efficient protein embedding using multi-teacher distillation learning
by: Shang, Jiayu, et al.
Published: (2024)

An improved, high yield method for isolating nuclei from individual zebrafish embryos for single-nucleus RNA sequencing
by: Rostomily, Clifford, et al.
Published: (2024)

Phenotypic plasticity in maize grain yield: Genetic and environmental insights of response to environmental gradients
by: Fatma Ozair, et al.
Published: (2025)

Are gene-by-environment interactions leveraged in multi-modality neural networks for breast cancer prediction?
by: Isgut, Monica, et al.
Published: (2024)

GenVarFormer: Predicting gene expression from long-range mutations in cancer
by: Laub, David, et al.
Published: (2025)

A selective review of recent developments in spatially variable gene detection for spatial transcriptomics
by: Adhikari, Sikta Das, et al.
Published: (2023)

Multi‐locus genome‐wide association study for grain yield and drought tolerance indices in sorghum accessions
by: Yirgalem Tsehaye, et al.
Published: (2024)

HEK-Omics: The promise of omics to optimize HEK293 for recombinant adeno-associated virus (rAAV) gene therapy manufacturing
by: Gurazada, Sai Guna Ranjan, et al.
Published: (2024)

Genome‐wide identification, gene expression and haplotype analysis of the rhomboid‐like gene family in wheat ( Triticum aestivum L.)
by: Yanyan Zhang, et al.
Published: (2024)

PhenotypeToGeneDownloaderR: automated multi-source retrieval and validation of phenotype-associated genes
by: Muneeb, Muhammad, et al.
Published: (2026)

Development and characterization of a wild emmer wheat backcross introgression population for hard winter wheat improvement
by: John H. Price, et al.
Published: (2025)

Erratum to: Fertilization of grapevine based on gene expression
Published: (2024)

Genomic characterisation and gene editing of Marinibacterium sp. CCB-SX1 as a new marine chassis for polyhydroxyalkanoate production.
by: Gong, Sixu, et al.
Published: (2025)

Integration of physiological and remote sensing traits for improved genomic prediction of wheat yield
by: Guillermo García‐Barrios, et al.
Published: (2025)

The mirage of DNA methylation in transcriptional regulation of plants
by: Peter Civan, et al.
Published: (2026)

Genome‐wide association study identifies consistent genomic loci for yield and nutritional quality in Ethiopian sorghum landraces
by: Chalachew Endalamaw, et al.
Published: (2026)