SpCAST: Decoding spatial transcriptomics at single-cell resolution with fast and interpretable analysis
Fuente:
arXiv
Saved in:
| Main Authors: | Zhang, Yiyang, Zhao, Bokai, Zhang, Xiaoru, Du, Zongchang, Sun, Xiaojuan, Jiang, Tianzi |
|---|---|
| Format: | Preprint |
| Published: |
2026
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Unraveling cell-cell communication with NicheNet by inferring active ligands from transcriptomics data
by: Sang-aram, Chananchida, et al.
Published: (2024)
by: Sang-aram, Chananchida, et al.
Published: (2024)
Ignition criteria for trigger waves in cell signaling
by: Schlomann, Brandon H., et al.
Published: (2025)
by: Schlomann, Brandon H., et al.
Published: (2025)
Benchmarking virtual cell models for in-the-wild perturbation response
by: Mao, Xinjie, et al.
Published: (2026)
by: Mao, Xinjie, et al.
Published: (2026)
Spatial dynamic modelling to understand how dendritic cell clustering affects T cell activation
by: Germano, Domenic P. J., et al.
Published: (2026)
by: Germano, Domenic P. J., et al.
Published: (2026)
A spatially resolved and lipid-structured model for macrophage populations in early human atherosclerotic lesions
by: Chambers, Keith L., et al.
Published: (2025)
by: Chambers, Keith L., et al.
Published: (2025)
Information bounds on the accuracy of cell polarization
by: Yi, Tau-Mu
Published: (2025)
by: Yi, Tau-Mu
Published: (2025)
Towards generalizable single-cell perturbation modeling via the Conditional Monge Gap
by: Driessen, Alice, et al.
Published: (2025)
by: Driessen, Alice, et al.
Published: (2025)
The morphology of cell spheroids in simple shear flow
by: Ferraro, Rosalia, et al.
Published: (2024)
by: Ferraro, Rosalia, et al.
Published: (2024)
Shaping nematic order in bacterial films with single-cell resolution patterning
by: Bec, Matthias Le, et al.
Published: (2026)
by: Bec, Matthias Le, et al.
Published: (2026)
Mapping, modeling, and reprogramming cell-fate decision making systems
by: Ham, Lucy, et al.
Published: (2024)
by: Ham, Lucy, et al.
Published: (2024)
Quantifying T cell morphodynamics and migration in 3D collagen matrices
by: Low, Yeeren I.
Published: (2024)
by: Low, Yeeren I.
Published: (2024)
Modelling adhesion in stochastic and mean-field models of cell migration
by: Noureen, Shahzeb Raja, et al.
Published: (2024)
by: Noureen, Shahzeb Raja, et al.
Published: (2024)
Cellular gradient flow structure connects single-cell-level rules and population-level dynamics
by: Horiguchi, Shuhei A., et al.
Published: (2022)
by: Horiguchi, Shuhei A., et al.
Published: (2022)
Gradient sensing limit of a cell when controlling the elongating direction
by: Nakamura, Kento, et al.
Published: (2024)
by: Nakamura, Kento, et al.
Published: (2024)
Coexistence of trapped and flow-transported nuclei enables fast pigeon post communication across multinucleated cell
by: Tong, Johnny, et al.
Published: (2026)
by: Tong, Johnny, et al.
Published: (2026)
A mathematical model for smooth muscle cell phenotype switching in atherosclerotic plaque
by: Ndenda, Joseph P., et al.
Published: (2024)
by: Ndenda, Joseph P., et al.
Published: (2024)
Coarse-graining and stochastic oscillations in a phenomenological model of cell-size homeostasis
by: Levien, Ethan, et al.
Published: (2025)
by: Levien, Ethan, et al.
Published: (2025)
Mathematical model of Nucleocytoplasmic Transport and Nuclear-to-Cell Ratio in a growing cell
by: Bai, Xuesong, et al.
Published: (2025)
by: Bai, Xuesong, et al.
Published: (2025)
MultistageOT: Multistage optimal transport infers trajectories from a snapshot of single-cell data
by: Tronstad, Magnus, et al.
Published: (2025)
by: Tronstad, Magnus, et al.
Published: (2025)
Broad cross-reactivity of the T-cell repertoire achieves specific and sufficiently rapid target searching
by: Xu, Jin, et al.
Published: (2017)
by: Xu, Jin, et al.
Published: (2017)
The spontaneous emergence of leaders and followers in a mathematical model of cranial neural crest cell migration
by: Johnson, Samuel W. S., et al.
Published: (2026)
by: Johnson, Samuel W. S., et al.
Published: (2026)
Single-cell directional sensing at ultra-low chemoattractant concentrations from extreme first-passage events
by: Fiorino, Vincent, et al.
Published: (2026)
by: Fiorino, Vincent, et al.
Published: (2026)
Using a probabilistic approach to derive a two-phase model of flow-induced cell migration
by: Ben-Ami, Yaron, et al.
Published: (2023)
by: Ben-Ami, Yaron, et al.
Published: (2023)
Phenotypic switching mechanisms determine the structure of cell migration into extracellular matrix under the `go-or-grow' hypothesis
by: Crossley, Rebecca M., et al.
Published: (2024)
by: Crossley, Rebecca M., et al.
Published: (2024)
Inference of weak-form partial differential equations describing migration and proliferation mechanisms in wound healing experiments on cancer cells
by: Kinnunen, Patrick C., et al.
Published: (2023)
by: Kinnunen, Patrick C., et al.
Published: (2023)
Stiff-FCS: Single-Cell Stiffness Profiling With Integrated Molecular and Functional Analysis
by: Zhang, Yuhao, et al.
Published: (2026)
by: Zhang, Yuhao, et al.
Published: (2026)
Complementing cell taxonomies with a multicellular functional analysis of tissues
by: Flores, Ricardo Omar Ramirez, et al.
Published: (2024)
by: Flores, Ricardo Omar Ramirez, et al.
Published: (2024)
Transduction of an immortalized olfactory ensheathing glia cell line with the green fluorescent protein (GFP) gene: evaluation of its neuroregenerative capacity as a proof of concept
by: Plaza, N, et al.
Published: (2024)
by: Plaza, N, et al.
Published: (2024)
Effects of multi-phase control mechanism on fibroblast dynamics: A segmented mathematical modeling approach
by: Fan, Shuqi, et al.
Published: (2026)
by: Fan, Shuqi, et al.
Published: (2026)
Clustering and spatial distribution of mitochondria in dendritic trees
by: Hidalgo-Soria, Mario, et al.
Published: (2024)
by: Hidalgo-Soria, Mario, et al.
Published: (2024)
Determining cell population size from cell fraction in cell plasticity models
by: Wang, Yuman, et al.
Published: (2024)
by: Wang, Yuman, et al.
Published: (2024)
How cytoskeletal crosstalk makes cells move: bridging cell-free and cell studies
by: Conboy, James P., et al.
Published: (2024)
by: Conboy, James P., et al.
Published: (2024)
Electroporation-mediated Metformin for effective anticancer treatment of triple-negative breast cancer cells
by: Sahu, Praveen, et al.
Published: (2024)
by: Sahu, Praveen, et al.
Published: (2024)
Translating and evaluating single-cell Boolean network interventions in the multiscale setting
by: Metzcar, John, et al.
Published: (2025)
by: Metzcar, John, et al.
Published: (2025)
Tumor-associated CD19$^+$ macrophages induce immunosuppressive microenvironment in hepatocellular carcinoma
by: Wang, Junli, et al.
Published: (2025)
by: Wang, Junli, et al.
Published: (2025)
The influence of cell phenotype on collective cell invasion into the extracellular matrix
by: Yin, Yuan, et al.
Published: (2025)
by: Yin, Yuan, et al.
Published: (2025)
Chemotaxing E. coli do not count single molecules
by: Mattingly, Henry H., et al.
Published: (2024)
by: Mattingly, Henry H., et al.
Published: (2024)
Stochastic multi-step cell size homeostasis model for cycling human cells
by: Rezaee, Sayeh, et al.
Published: (2025)
by: Rezaee, Sayeh, et al.
Published: (2025)
Intracellular Measurement-Informed Multiscale Modeling for Scalable iPSC Manufacturing
by: Cheng, Fuqiang, et al.
Published: (2026)
by: Cheng, Fuqiang, et al.
Published: (2026)
Immune cells interactions in the tumor microenvironment
by: Tousian, Mobina, et al.
Published: (2024)
by: Tousian, Mobina, et al.
Published: (2024)
Similar Items
-
Unraveling cell-cell communication with NicheNet by inferring active ligands from transcriptomics data
by: Sang-aram, Chananchida, et al.
Published: (2024) -
Ignition criteria for trigger waves in cell signaling
by: Schlomann, Brandon H., et al.
Published: (2025) -
Benchmarking virtual cell models for in-the-wild perturbation response
by: Mao, Xinjie, et al.
Published: (2026) -
Spatial dynamic modelling to understand how dendritic cell clustering affects T cell activation
by: Germano, Domenic P. J., et al.
Published: (2026) -
A spatially resolved and lipid-structured model for macrophage populations in early human atherosclerotic lesions
by: Chambers, Keith L., et al.
Published: (2025)