AtomComposer: Discovering Chemical Space from First Principles with Reinforcement Learning

Fuente: arXiv
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Autori principali: Hastrup, Bjarke, Cornet, Francois, Vegge, Tejs, Bhowmik, Arghya
Natura: Preprint
Pubblicazione: 2026
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author Hastrup, Bjarke
Cornet, Francois
Vegge, Tejs
Bhowmik, Arghya
author_facet Hastrup, Bjarke
Cornet, Francois
Vegge, Tejs
Bhowmik, Arghya
contents Discovering novel stable molecules without training data remains a grand scientific challenge. Current molecular generative models are trained on large, pre-curated datasets, which introduce biases and limit exploration of novel chemistry. In contrast, we propose a new paradigm: autonomous, generalized agents capable of mapping vast, unknown chemical spaces without any pretraining. For the first time, we present AtomComposer, a self-guided agent that autonomously constructs valid 3D isomers under stoichiometric constraints and is trained exclusively online using reinforcement learning. Unlike existing approaches that generally overfit to a specific chemical formula, we establish a multi-composition training scheme that enables a broad generalization across diverse chemistry, guided by energy- and validity-based rewards. Our agent can discover up to an order of magnitude more valid isomers on unseen test formulas than existing single-composition reinforcement-learning baselines trained with per-step energy rewards. These results fulfill the promise of online reinforcement learning as a powerful paradigm for scalable, from-scratch exploration of chemical configuration space.
format Preprint
id arxiv_https___arxiv_org_abs_2605_28287
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle AtomComposer: Discovering Chemical Space from First Principles with Reinforcement Learning
Hastrup, Bjarke
Cornet, Francois
Vegge, Tejs
Bhowmik, Arghya
Machine Learning
Materials Science
Discovering novel stable molecules without training data remains a grand scientific challenge. Current molecular generative models are trained on large, pre-curated datasets, which introduce biases and limit exploration of novel chemistry. In contrast, we propose a new paradigm: autonomous, generalized agents capable of mapping vast, unknown chemical spaces without any pretraining. For the first time, we present AtomComposer, a self-guided agent that autonomously constructs valid 3D isomers under stoichiometric constraints and is trained exclusively online using reinforcement learning. Unlike existing approaches that generally overfit to a specific chemical formula, we establish a multi-composition training scheme that enables a broad generalization across diverse chemistry, guided by energy- and validity-based rewards. Our agent can discover up to an order of magnitude more valid isomers on unseen test formulas than existing single-composition reinforcement-learning baselines trained with per-step energy rewards. These results fulfill the promise of online reinforcement learning as a powerful paradigm for scalable, from-scratch exploration of chemical configuration space.
title AtomComposer: Discovering Chemical Space from First Principles with Reinforcement Learning
topic Machine Learning
Materials Science
url https://arxiv.org/abs/2605.28287