Copertina

PhyloFrame: A DataFrame-based Library for Fast, Flexible Phylogenetic Computation

Fuente: arXiv

Salvato in:

Dettagli Bibliografici
Autori principali:	Moreno, Matthew Andres, Sukumaran, Jeet, Zaman, Luis, Dolson, Emily
Natura:	Preprint
Pubblicazione:	2026
Soggetti:	Populations and Evolution
Accesso online:	Acceder al recurso
Tags:	Aggiungi Tag Nessun Tag, puoi essere il primo ad aggiungerne!!

Documenti analoghi

DendroPy 5: a mature Python library for phylogenetic computing
di: Moreno, Matthew Andres, et al.
Pubblicazione: (2024)

A Guide to Tracking Phylogenies in Parallel and Distributed Agent-based Evolution Models
di: Moreno, Matthew Andres, et al.
Pubblicazione: (2024)

Ecology, Spatial Structure, and Selection Pressure Induce Strong Signatures in Phylogenetic Structure
di: Moreno, Matthew Andres, et al.
Pubblicazione: (2024)

Extending a Phylogeny-based Method for Detecting Signatures of Multi-level Selection for Applications in Artificial Life
di: Moreno, Matthew Andres, et al.
Pubblicazione: (2025)

PhyloGFN: Phylogenetic inference with generative flow networks
di: Zhou, Mingyang, et al.
Pubblicazione: (2023)

PhyloProfile v2: Scalable Exploration of Multilayered Phylogenetic Profiles via Dimensionality Reduction
di: Tran, Vinh, et al.
Pubblicazione: (2025)

Analysis of Phylogeny Tracking Algorithms for Serial and Multiprocess Applications
di: Moreno, Matthew Andres, et al.
Pubblicazione: (2024)

Phylotrack: C++ and Python libraries for in silico phylogenetic tracking
di: Dolson, Emily, et al.
Pubblicazione: (2024)

PhyloVAE: Unsupervised Learning of Phylogenetic Trees via Variational Autoencoders
di: Xie, Tianyu, et al.
Pubblicazione: (2025)

PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation
di: Duan, ChenRui, et al.
Pubblicazione: (2024)

From trees to traits: A review of advances in PhyloG2P methods and future directions
di: Macdonald, Arlie R., et al.
Pubblicazione: (2025)

Estimation of Phylogenetic Tree using Gene Sequencing Data
di: Rafiuddin, S M
Pubblicazione: (2025)

Phylo2Vec: a vector representation for binary trees
di: Penn, Matthew J, et al.
Pubblicazione: (2023)

ARTreeFormer: A Faster Attention-based Autoregressive Model for Phylogenetic Inference
di: Xie, Tianyu, et al.
Pubblicazione: (2025)

The Cognate Data Bottleneck in Language Phylogenetics
di: Häuser, Luise, et al.
Pubblicazione: (2025)

Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian
di: Bhatt, Samir, et al.
Pubblicazione: (2025)

Group-Based Phylogenetic Models on 3-Sunlet Networks
di: Cox, Shelby, et al.
Pubblicazione: (2024)

On the Approximation of Phylogenetic Distance Functions by Artificial Neural Networks
di: Rosenzweig, Benjamin K., et al.
Pubblicazione: (2025)

Treemble: A Graphical Tool to Generate Newick Strings from Phylogenetic Tree Images
di: Allard, John B., et al.
Pubblicazione: (2025)

PhyloLM : Inferring the Phylogeny of Large Language Models and Predicting their Performances in Benchmarks
di: Yax, Nicolas, et al.
Pubblicazione: (2024)

Weighted Food Webs Make Computing Phylogenetic Diversity So Much Harder
di: Schestag, Jannik
Pubblicazione: (2025)

Order-Dependent Dissimilarity Measures on Phylogenetic Trees
di: Linz, Simone, et al.
Pubblicazione: (2025)

Methods to Estimate Cryptic Sequence Complexity
di: Moreno, Matthew Andres
Pubblicazione: (2024)

Metagenomic Analysis using Phylogenetic Placement -- A Review of the First Decade
di: Czech, Lucas, et al.
Pubblicazione: (2022)

Bounds on the Treewidth of Level-k Rooted Phylogenetic Networks
di: Markin, Alexey, et al.
Pubblicazione: (2024)

Tropical Logistic Regression Model on Space of Phylogenetic Trees
di: Aliatimis, Georgios, et al.
Pubblicazione: (2023)

Phylogenetic least squares estimation without genetic distances
di: Chi, Peter B., et al.
Pubblicazione: (2023)

Phylogenetic network classes through the lens of expanding covers
di: Francis, Andrew, et al.
Pubblicazione: (2023)

Multivariate Aspects of Phylogenetic Comparative Methods
di: Bartoszek, Krzysztof
Pubblicazione: (2024)

Statistics for Phylogenetic Trees in the Presence of Stickiness
di: Lammers, Lars, et al.
Pubblicazione: (2024)

Distinguishing Phylogenetic Level-2 Networks with Quartets and Inter-Taxon Quartet Distances
di: Holtgrefe, Niels, et al.
Pubblicazione: (2025)

Phylogenetic Tree Inference with Tropical Axial Attention
di: Teska, Chris, et al.
Pubblicazione: (2026)

A Visual Discrete Event-based Simulator for Protection of Plants against Herbivores Employed as Computational Optimization Game
di: Dietrich, Lucas, et al.
Pubblicazione: (2025)

Fast flowing populations are not well mixed
di: Herrerías-Azcué, Francisco, et al.
Pubblicazione: (2017)

WebCVTree4: A Newly Designed Phylogenetic and Taxonomic Study Platform for Prokaryotes Using Composition Vectors and Whole Genomes
di: Zuo, Guanghong
Pubblicazione: (2026)

Computational and Experimental Exploration of Protein Fitness Landscapes: Navigating Smooth and Rugged Terrains
di: Sandhu, Mahakaran, et al.
Pubblicazione: (2024)

Flexible inference of evolutionary accumulation dynamics using uncertain observational data
di: Renz, Jessica, et al.
Pubblicazione: (2025)

Inferring Phylogenetic Networks from Required and Forbidden LCA-Constraints
di: Ebert, Patricia A., et al.
Pubblicazione: (2026)

Evaluating Phylogenetic Comparative Methods under Reticulate Evolutionary Scenarios
di: Morley, Lydia, et al.
Pubblicazione: (2026)

Unsupervised Learning of Phylogenetic Trees via Split-Weight Embedding
di: Kong, Yibo, et al.
Pubblicazione: (2023)