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Main Authors: Davoudi, Saeedeh, Iranmanesh, Reihaneh, Frieder, Ophir, Goharian, Nazli
Format: Preprint
Published: 2026
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Online Access:https://arxiv.org/abs/2605.30599
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author Davoudi, Saeedeh
Iranmanesh, Reihaneh
Frieder, Ophir
Goharian, Nazli
author_facet Davoudi, Saeedeh
Iranmanesh, Reihaneh
Frieder, Ophir
Goharian, Nazli
contents Medical knowledge is continuously evolving. This creates a need to update or selectively forget information encoded in already-trained medical LLMs. Machine unlearning aims to remove the influence of specific training data from a model without full retraining. Yet, existing unlearning benchmarks rely on synthetic or small-scale general data, leaving clinical unlearning understudied. We introduce AMNESIA, the first large-scale, open source benchmark for medical unlearning, with 70,560 question-answer pairs from 8,820 patient notes across 11 disease categories. AMNESIA includes both factual questions testing direct recall and reasoning questions testing clinical inference. We use it to evaluate four widely used unlearning methods at both random patient and disease-level, and introduce a new metric for detecting leakage of medical terminology. We show that unlearning individual patients erodes knowledge of others with the same condition, calling for methods that can better separate patients from shared clinical knowledge.
format Preprint
id arxiv_https___arxiv_org_abs_2605_30599
institution arXiv
publishDate 2026
record_format arxiv
spellingShingle AMNESIA: A Large Scale Medical Unlearning Benchmark Suite with Disease-Informed Analysis
Davoudi, Saeedeh
Iranmanesh, Reihaneh
Frieder, Ophir
Goharian, Nazli
Machine Learning
Computation and Language
Medical knowledge is continuously evolving. This creates a need to update or selectively forget information encoded in already-trained medical LLMs. Machine unlearning aims to remove the influence of specific training data from a model without full retraining. Yet, existing unlearning benchmarks rely on synthetic or small-scale general data, leaving clinical unlearning understudied. We introduce AMNESIA, the first large-scale, open source benchmark for medical unlearning, with 70,560 question-answer pairs from 8,820 patient notes across 11 disease categories. AMNESIA includes both factual questions testing direct recall and reasoning questions testing clinical inference. We use it to evaluate four widely used unlearning methods at both random patient and disease-level, and introduce a new metric for detecting leakage of medical terminology. We show that unlearning individual patients erodes knowledge of others with the same condition, calling for methods that can better separate patients from shared clinical knowledge.
title AMNESIA: A Large Scale Medical Unlearning Benchmark Suite with Disease-Informed Analysis
topic Machine Learning
Computation and Language
url https://arxiv.org/abs/2605.30599