Imagen de Portada

CellBRIDGE: Learning Cellular Trajectories via Interaction-Aware Alignment

Fuente: arXiv

Guardado en:

Detalles Bibliográficos
Autores principales:	Estévez, Silas Ruhrberg, Huynh, Nicolas, Liu, Tennison, Kortlever, Roderik M., Evan, Gerard I., Bentley, David L., van der Schaar, Mihaela
Formato:	Preprint
Publicado:	2026
Materias:	Machine Learning Genomics
Acceso en línea:	Acceder al recurso
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

Ejemplares similares

Interpretable DNA Sequence Classification via Dynamic Feature Generation in Decision Trees
por: Huynh, Nicolas, et al.
Publicado: (2026)

Hypothesis Hunting with Evolving Networks of Autonomous Scientific Agents
por: Liu, Tennison, et al.
Publicado: (2025)

Timely Clinical Diagnosis through Active Test Selection
por: Estévez, Silas Ruhrberg, et al.
Publicado: (2025)

Decision Tree Induction Through LLMs via Semantically-Aware Evolution
por: Liu, Tennison, et al.
Publicado: (2025)

Automatic Construction of Clinical Scoring Systems with LLM Agents
por: Estévez, Silas Ruhrberg, et al.
Publicado: (2026)

CellStream: Dynamical Optimal Transport Informed Embeddings for Reconstructing Cellular Trajectories from Snapshots Data
por: Ling, Yue, et al.
Publicado: (2025)

Fast Generalization after Interpolation via Critically Damped Momentum Optimization
por: Muscarnera, Luca, et al.
Publicado: (2026)

PACE: Geometry-Aware Bridge Transport for Single-Cell Trajectory Inference
por: Yu, Chenglei, et al.
Publicado: (2026)

Integrative Analysis of Epigenetic, Transcriptomic, and Metabolomic Responses to Arsenic Exposure Using Coupled Matrix Factorization
por: Suthahar, Sujit Silas Armstrong, et al.
Publicado: (2025)

Active Timepoint Selection for Learning Measure-Valued Trajectories
por: Huynh, Nicolas, et al.
Publicado: (2026)

Truly Self-Improving Agents Require Intrinsic Metacognitive Learning
por: Liu, Tennison, et al.
Publicado: (2025)

Knowledge-Informed Kernel State Reconstruction from Heterogeneous Partial Observations
por: Muscarnera, Luca, et al.
Publicado: (2026)

Exploring the genomics of abiotic stress tolerance and crop resilience to climate change
por: Rajeev K. Varshney, et al.
Publicado: (2024)

Superimposed Hi-C: A Solution Proposed for Identifying Single Cell's Chromosomal Interactions
por: Zhang, Jia, et al.
Publicado: (2024)

Trajectory Inference for Single Cell Omics
por: Hutton, Alexandre, et al.
Publicado: (2025)

Single‐Cell Transcriptomic Atlas Reveals Metabolic Reprogramming and Transdifferentiation Trajectories in Tubular Epithelial Cells During Chronic Kidney Disease Progression
por: Xinhui Mao, et al.
Publicado: (2026)

Inflammatory Cell Interactions in the Rotator Cuff Microenvironment: Insights From Single‐Cell Sequencing
por: Wencai Liu, et al.
Publicado: (2025)

needLR: Long-read structural variant annotation with population-scale frequency estimation
por: Gustafson, Jonas A., et al.
Publicado: (2025)

Nephrobase Cell+: Multimodal Single-Cell Foundation Model for Decoding Kidney Biology
por: Li, Chenyu, et al.
Publicado: (2025)

Automatically Learning Hybrid Digital Twins of Dynamical Systems
por: Holt, Samuel, et al.
Publicado: (2024)

Agents Require Metacognitive and Strategic Reasoning to Succeed in the Coming Labor Markets
por: Zhang, Simpson, et al.
Publicado: (2025)

An Integrated Genomics Workflow Tool: Simulating Reads, Evaluating Read Alignments, and Optimizing Variant Calling Algorithms
por: Ismail, Fathima Nuzla, et al.
Publicado: (2025)

PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis
por: Wu, Yan, et al.
Publicado: (2024)

Central Dogma Transformer: Towards Mechanism-Oriented AI for Cellular Understanding
por: Ota, Nobuyuki
Publicado: (2026)

ORBIT: Learning Gene Program Co-Activation Structure for Cell-Type-Stratified Pathway Rewiring Analysis in Single-Cell Transcriptomics
por: Wang, Yuechen, et al.
Publicado: (2026)

A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
por: Davies, Billie E, et al.
Publicado: (2026)

Imaging Exploration of Molecular Subtypes in Tongue Squamous Cell Carcinoma
por: Pan, Hao, et al.
Publicado: (2026)

Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model
por: Lee, UkJin
Publicado: (2026)

ClusterChirp: Scalable Interactive Exploration of Omics Data with Natural Language-Guided Analysis
por: Rawal, Osho, et al.
Publicado: (2026)

Engineering Spatial and Molecular Features from Cellular Niches to Inform Predictions of Inflammatory Bowel Disease
por: Tan, Myles Joshua Toledo, et al.
Publicado: (2025)

Active Task Disambiguation with LLMs
por: Kobalczyk, Katarzyna, et al.
Publicado: (2025)

Large Language Models to Enhance Bayesian Optimization
por: Liu, Tennison, et al.
Publicado: (2024)

Autoformulation of Mathematical Optimization Models Using LLMs
por: Astorga, Nicolás, et al.
Publicado: (2024)

A Systematic Overview of Single-Cell Transcriptomics Databases, their Use cases, and Limitations
por: Gondal, Mahnoor N., et al.
Publicado: (2024)

CARTEpigenoQC: A Quality Control Toolkit for CAR-T Single-Cell Epigenomic Data
por: Lai, Kaitao
Publicado: (2025)

HybridQC: Machine Learning-Augmented Quality Control for Single-Cell RNA-seq Data
por: Lai, Kaitao
Publicado: (2025)

Genomic prediction of synthetic hexaploid wheat upon tetraploid durum and diploid Aegilops parental pools
por: Susanne Dreisigacker, et al.
Publicado: (2024)

Conditional Monte Carlo Tree Diffusion for Designing Cell-Type-Specific and Biologically Faithful Regulatory DNA
por: Awasthi, Animesh, et al.
Publicado: (2026)

Genomes of the Caribbean reef-building corals Colpophyllia natans, Dendrogyra cylindrus, and Siderastrea siderea.
por: Locatelli, Nicolas S, et al.
Publicado: (2025)

Deep Learning-based Feature Discovery for Decoding Phenotypic Plasticity in Pediatric High-Grade Gliomas Single-Cell Transcriptomics
por: Uthamacumaran, Abicumaran
Publicado: (2025)