Copertina

Scalable Inference-Time Annealing with Surrogate Likelihood Estimators

Fuente: arXiv

Salvato in:

Dettagli Bibliografici
Autori principali:	Peñaherrera, Daniel, Aggarwal, Rishal, Koes, David Ryan
Natura:	Preprint
Pubblicazione:	2026
Soggetti:	Machine Learning Biomolecules
Accesso online:	Acceder al recurso
Tags:	Aggiungi Tag Nessun Tag, puoi essere il primo ad aggiungerne!!

Documenti analoghi

Accelerating Inference in Molecular Diffusion Models with Latent Representations of Protein Structure
di: Dunn, Ian, et al.
Pubblicazione: (2023)

Mixed Continuous and Categorical Flow Matching for 3D De Novo Molecule Generation
di: Dunn, Ian, et al.
Pubblicazione: (2024)

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation
di: Dunn, Ian, et al.
Pubblicazione: (2024)

FlowMol3: Flow Matching for 3D De Novo Small-Molecule Generation
di: Dunn, Ian, et al.
Pubblicazione: (2025)

BoltzNCE: Learning Likelihoods for Boltzmann Generation with Stochastic Interpolants and Noise Contrastive Estimation
di: Aggarwal, Rishal, et al.
Pubblicazione: (2025)

Scaling Structure Aware Virtual Screening to Billions of Molecules with SPRINT
di: McNutt, Andrew T., et al.
Pubblicazione: (2024)

AReUReDi: Annealed Rectified Updates for Refining Discrete Flows with Multi-Objective Guidance
di: Chen, Tong, et al.
Pubblicazione: (2025)

Scalable Normalizing Flows Enable Boltzmann Generators for Macromolecules
di: Kim, Joseph C., et al.
Pubblicazione: (2024)

Inference-time optimization for experiment-grounded protein ensemble generation
di: Maddipatla, Advaith, et al.
Pubblicazione: (2026)

HemePLM-Diffuse: A Scalable Generative Framework for Protein-Ligand Dynamics in Large Biomolecular System
di: Thakur, Rakesh, et al.
Pubblicazione: (2025)

Hierarchical Sparse Bayesian Multitask Model with Scalable Inference for Microbiome Analysis
di: Zhu, Haonan, et al.
Pubblicazione: (2025)

Scoreformer: A Surrogate Model For Large-Scale Prediction of Docking Scores
di: Ciudad, Álvaro, et al.
Pubblicazione: (2024)

RosettaSearch: Multi-Objective Inference-Time Search for Protein Sequence Design
di: Kshirsagar, Meghana, et al.
Pubblicazione: (2026)

De novo antibody design with SE(3) diffusion
di: Cutting, Daniel, et al.
Pubblicazione: (2024)

UniSim: A Unified Simulator for Time-Coarsened Dynamics of Biomolecules
di: Yu, Ziyang, et al.
Pubblicazione: (2025)

Multi-Objective Latent Space Optimization of Generative Molecular Design Models
di: Abeer, A N M Nafiz, et al.
Pubblicazione: (2022)

Higher-Order Message Passing for Glycan Representation Learning
di: Joeres, Roman, et al.
Pubblicazione: (2024)

Molecular Diffusion Models with Virtual Receptors
di: Halfon, Matan, et al.
Pubblicazione: (2024)

TerraBind: Fast and Accurate Binding Affinity Prediction through Coarse Structural Representations
di: Rossi, Matteo, et al.
Pubblicazione: (2026)

Adaptive Protein Tokenization
di: Dilip, Rohit, et al.
Pubblicazione: (2026)

Rethinking Performance Measures of RNA Secondary Structure Problems
di: Runge, Frederic, et al.
Pubblicazione: (2023)

Generative Modeling of Full-Atom Protein Conformations using Latent Diffusion on Graph Embeddings
di: Sengar, Aditya, et al.
Pubblicazione: (2025)

Automated Neuron Labelling Enables Generative Steering and Interpretability in Protein Language Models
di: Banerjee, Arjun, et al.
Pubblicazione: (2025)

Unlocking hidden biomolecular conformational landscapes in diffusion models at inference time
di: Richman, Daniel D., et al.
Pubblicazione: (2025)

Flow Autoencoders are Effective Protein Tokenizers
di: Dilip, Rohit, et al.
Pubblicazione: (2025)

Assessing interaction recovery of predicted protein-ligand poses
di: Errington, David, et al.
Pubblicazione: (2024)

FraGNNet: A Deep Probabilistic Model for Tandem Mass Spectrum Prediction
di: Young, Adamo, et al.
Pubblicazione: (2024)

Steering Generative Models with Experimental Data for Protein Fitness Optimization
di: Yang, Jason, et al.
Pubblicazione: (2025)

Scalable and Cost-Efficient de Novo Template-Based Molecular Generation
di: Gaiński, Piotr, et al.
Pubblicazione: (2025)

STAR-VAE: Latent Variable Transformers for Scalable and Controllable Molecular Generation
di: Kwon, Bum Chul, et al.
Pubblicazione: (2025)

Mechanisms of AI Protein Folding in ESMFold
di: Lu, Kevin, et al.
Pubblicazione: (2026)

Practical and Asymptotically Exact Conditional Sampling in Diffusion Models
di: Wu, Luhuan, et al.
Pubblicazione: (2023)

ProteinGuide: On-the-fly property guidance for protein sequence generative models
di: Xiong, Junhao, et al.
Pubblicazione: (2025)

Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models
di: Tan, Yang, et al.
Pubblicazione: (2024)

A large dataset curation and benchmark for drug target interaction
di: Golts, Alex, et al.
Pubblicazione: (2024)

FREED++: Improving RL Agents for Fragment-Based Molecule Generation by Thorough Reproduction
di: Telepov, Alexander, et al.
Pubblicazione: (2024)

Assessing Reusability of Deep Learning-Based Monotherapy Drug Response Prediction Models Trained with Omics Data
di: Overbeek, Jamie C., et al.
Pubblicazione: (2024)

Protein Discovery with Discrete Walk-Jump Sampling
di: Frey, Nathan C., et al.
Pubblicazione: (2023)

Differentiable Folding for Nearest Neighbor Model Optimization
di: Krueger, Ryan K., et al.
Pubblicazione: (2025)

t-SMILES: A Scalable Fragment-based Molecular Representation Framework for De Novo Molecule Generation
di: Wu, Juan-Ni, et al.
Pubblicazione: (2023)