Gene sequences of the lichen Cetraria aculeata

Fuente: PANGAEA

Gespeichert in:

Bibliographische Detailangaben
Hauptverfasser:	Fernández-Mendoza, Fernando, Domaschke, Stephanie, García, Miguel Ángel, Jordan, Patrick, Martín, María, Printzen, Christian
Format:	Dataset Open Access
Sprache:	en
Veröffentlicht:	PANGAEA 2011
Schlagworte:	Ant1; Ant3; Antarctica1; Antarctica3; Biological sample; BIOS; Chi1; Chile; Chile, XII region de Magalanes y de la Antartica Chilena, Punta Delgada; Comment of event; Date/Time of event; Event label; Fal2; Falkland; Falkland Islands, East Falkland, East of Stanley; FASTA-Format; Iceland, Skagafjardarsysla; Iceland, Sudur-Pingeyjarsysla; Iceland1; Iceland8; Isl1; Isl8; Kaz1; Kazakhstan; Kazakhstan, Kokchetav area; Latitude of event; Location of event; Longitude of event; Optional event label; Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas; South Shetland Islands, King George Island; Spa1; Spain; Spain, Castilla y León, Provincia de León, Herreros de Jamuz; SPP1158; Sva1; Sva4; Svalbard, Adventsdalen; Svalbard, Longyearbyen; Svalbard1; Svalbard4; Tur1; Turkey; Turkey, Bolu Province; Uniform resource locator/link to file
Online-Zugang:	Acceder al recurso
Tags:	Tag hinzufügen Keine Tags, Fügen Sie den ersten Tag hinzu!

_version_	1867170915749462016
author	Fernández-Mendoza, Fernando Domaschke, Stephanie García, Miguel Ángel Jordan, Patrick Martín, María Printzen, Christian
author_facet	Fernández-Mendoza, Fernando Domaschke, Stephanie García, Miguel Ángel Jordan, Patrick Martín, María Printzen, Christian
collection	Datos científicos de ciencias marinas y ambientales
contents	Lichens are symbioses between fungi (mycobionts) and photoautotrophic green algae or cyanobacteria (photobionts). Many lichens occupy large distributional ranges covering several climatic zones. So far, little is known about the large-scale phylogeography of lichen photobionts and their role in shaping the distributional ranges of lichens. We studied south polar, temperate and north polar populations of the widely distributed fruticose lichen Cetraria aculeata. Based on the DNA sequences from three loci for each symbiont, we compared the genetic structure of mycobionts and photobionts. Phylogenetic reconstructions and Bayesian clustering methods divided the mycobiont and photobiont data sets into three groups. An AMOVA shows that the genetic variance of the photobiont is best explained by differentiation between temperate and polar regions and that of the mycobiont by an interaction of climatic and geographical factors. By partialling out the relative contribution of climate, geography and codispersal, we found that the most relevant factors shaping the genetic structure of the photobiont are climate and a history of codispersal. Mycobionts in the temperate region are consistently associated with a specific photobiont lineage. We therefore conclude that a photobiont switch in the past enabled C. aculeata to colonize temperate as well as polar habitats. Rare photobiont switches may increase the geographical range and ecological niche of lichen mycobionts by associating them with locally adapted photobionts in climatically different regions and, together with isolation by distance, may lead to genetic isolation between populations and thus drive the evolution of lichens.
format	Dataset Open Access
id	pangaea_https___doi_org_10_1594_PANGAEA_767433
institution	PANGAEA
language	en
publishDate	2011
publisher	PANGAEA
record_format	pangaea
spellingShingle	Gene sequences of the lichen Cetraria aculeata Fernández-Mendoza, Fernando Domaschke, Stephanie García, Miguel Ángel Jordan, Patrick Martín, María Printzen, Christian Ant1; Ant3; Antarctica1; Antarctica3; Biological sample; BIOS; Chi1; Chile; Chile, XII region de Magalanes y de la Antartica Chilena, Punta Delgada; Comment of event; Date/Time of event; Event label; Fal2; Falkland; Falkland Islands, East Falkland, East of Stanley; FASTA-Format; Iceland, Skagafjardarsysla; Iceland, Sudur-Pingeyjarsysla; Iceland1; Iceland8; Isl1; Isl8; Kaz1; Kazakhstan; Kazakhstan, Kokchetav area; Latitude of event; Location of event; Longitude of event; Optional event label; Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas; South Shetland Islands, King George Island; Spa1; Spain; Spain, Castilla y León, Provincia de León, Herreros de Jamuz; SPP1158; Sva1; Sva4; Svalbard, Adventsdalen; Svalbard, Longyearbyen; Svalbard1; Svalbard4; Tur1; Turkey; Turkey, Bolu Province; Uniform resource locator/link to file Lichens are symbioses between fungi (mycobionts) and photoautotrophic green algae or cyanobacteria (photobionts). Many lichens occupy large distributional ranges covering several climatic zones. So far, little is known about the large-scale phylogeography of lichen photobionts and their role in shaping the distributional ranges of lichens. We studied south polar, temperate and north polar populations of the widely distributed fruticose lichen Cetraria aculeata. Based on the DNA sequences from three loci for each symbiont, we compared the genetic structure of mycobionts and photobionts. Phylogenetic reconstructions and Bayesian clustering methods divided the mycobiont and photobiont data sets into three groups. An AMOVA shows that the genetic variance of the photobiont is best explained by differentiation between temperate and polar regions and that of the mycobiont by an interaction of climatic and geographical factors. By partialling out the relative contribution of climate, geography and codispersal, we found that the most relevant factors shaping the genetic structure of the photobiont are climate and a history of codispersal. Mycobionts in the temperate region are consistently associated with a specific photobiont lineage. We therefore conclude that a photobiont switch in the past enabled C. aculeata to colonize temperate as well as polar habitats. Rare photobiont switches may increase the geographical range and ecological niche of lichen mycobionts by associating them with locally adapted photobionts in climatically different regions and, together with isolation by distance, may lead to genetic isolation between populations and thus drive the evolution of lichens.
title	Gene sequences of the lichen Cetraria aculeata
topic	Ant1; Ant3; Antarctica1; Antarctica3; Biological sample; BIOS; Chi1; Chile; Chile, XII region de Magalanes y de la Antartica Chilena, Punta Delgada; Comment of event; Date/Time of event; Event label; Fal2; Falkland; Falkland Islands, East Falkland, East of Stanley; FASTA-Format; Iceland, Skagafjardarsysla; Iceland, Sudur-Pingeyjarsysla; Iceland1; Iceland8; Isl1; Isl8; Kaz1; Kazakhstan; Kazakhstan, Kokchetav area; Latitude of event; Location of event; Longitude of event; Optional event label; Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas; South Shetland Islands, King George Island; Spa1; Spain; Spain, Castilla y León, Provincia de León, Herreros de Jamuz; SPP1158; Sva1; Sva4; Svalbard, Adventsdalen; Svalbard, Longyearbyen; Svalbard1; Svalbard4; Tur1; Turkey; Turkey, Bolu Province; Uniform resource locator/link to file
url	https://doi.org/10.1594/PANGAEA.767433

if (filemtime($filename) + $maxlifetime < time()) { unlink($filename); $count++; } } return $count; } /** * A function that is called internally when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ protected function saveSession($sessId, $data): bool { $sessFile = $this->path . '/sess_' . $sessId; if ($handle = fopen($sessFile, 'w')) { $return = false; // Lock the file for exclusive access to avoid issues with multiple // processes writing session simultaneously: if (flock($handle, LOCK_EX)) { $return = fwrite($handle, $data); // Make sure that there's no trailing data by truncating the file to // the correct length: ftruncate($handle, strlen($data)); fflush($handle); flock($handle, LOCK_UN); } fclose($handle); if ($return !== false) { return true; } } // If we got this far, something went wrong with the file output... // It is tempting to throw an exception here, but this code is called // outside of the context of exception handling, so all we can do is // echo a message.

// Anecdotal testing Today and Yesterday seems to indicate destroy() // is called by the garbage collector and everything is good. // Something to keep in mind though. return 0; } /** * Write function that is called when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ public function write($sessId, $data): bool { if ($this->writesDisabled) { return true; } return $this->saveSession($sessId, $data); } /** * A function that is called internally when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ abstract protected function saveSession($sessId, $data): bool; }

* * @return void */ public function writeClose() { // The assumption is that we're using PHP's ext/session. // session_write_close() will actually overwrite $_SESSION with an // empty array on completion -- which leads to a mismatch between what // is in the storage object and $_SESSION. To get around this, we // temporarily reset $_SESSION to an array, and then re-link it to // the storage object. // // Additionally, while you _can_ write to $_SESSION following a // session_write_close() operation, no changes made to it will be // flushed to the session handler. As such, we now mark the storage // object isImmutable. $storage = $this->getStorage(); if (! $storage->isImmutable()) { $_SESSION = $storage->toArray(true); session_write_close(); $storage->fromArray($_SESSION); $storage->markImmutable(); } } /** * Attempt to set the session name * * If the session has already been started, or if the name provided fails * validation, an exception will be raised. * * @param string $name * @return SessionManager * @throws Exception\InvalidArgumentException */ public function setName($name) { if ($this->sessionExists()) { throw new Exception\InvalidArgumentException( 'Cannot set session name after a session has already started'

Environment & details:

GET Data empty

POST Data empty

Files empty

Key	Value
ui	"standard"
language	"de"
VUFIND_SESSION	"2f7494224b0dfdefbf0a6da1fed2f510"

Session

Key	Value
__Laminas	array:2 [`"_REQUEST_ACCESS_TIME" => 1790951452.1774 "_VALID" => array:1 [ "Laminas\Session\Validator\Id" => "2f7494224b0dfdefbf0a6da1fed2f510" ]`]
SessionState	Laminas\Stdlib\ArrayObject {#938}
FlashMessenger	Laminas\Stdlib\ArrayObject {#1433}
SessionHelper	Laminas\Stdlib\ArrayObject {#1763}

Server/Request Data

Key	Value
REDIRECT_VUFIND_LOCAL_DIR	"/usr/local/vufind/local"
REDIRECT_HTTPS	"on"
REDIRECT_SSL_TLS_SNI	"info.umar.mx"
REDIRECT_STATUS	"200"
VUFIND_LOCAL_DIR	"/usr/local/vufind/local"
HTTPS	"on"
SSL_TLS_SNI	"info.umar.mx"
HTTP_ACCEPT	"/"
HTTP_USER_AGENT	"Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)"
HTTP_COOKIE	"ui=standard; language=de; VUFIND_SESSION=2f7494224b0dfdefbf0a6da1fed2f510"
HTTP_ACCEPT_ENCODING	"gzip, br, zstd, deflate"
HTTP_HOST	"info.umar.mx"
PATH	"/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/snap/bin"
SERVER_SIGNATURE	"<address>Apache/2.4.66 (Ubuntu) Server at info.umar.mx Port 443</address>\n"
SERVER_SOFTWARE	"Apache/2.4.66 (Ubuntu)"
SERVER_NAME	"info.umar.mx"
SERVER_ADDR	"200.23.222.19"
SERVER_PORT	"443"
REMOTE_ADDR	"216.73.217.142"
DOCUMENT_ROOT	"/usr/local/vufind/public"
REQUEST_SCHEME	"https"
CONTEXT_PREFIX	""
CONTEXT_DOCUMENT_ROOT	"/usr/local/vufind/public"
SERVER_ADMIN	"admin@localhost"
SCRIPT_FILENAME	"/usr/local/vufind/public/index.php"
REMOTE_PORT	"62586"
REDIRECT_URL	"/Record/pangaea_https___doi_org_10_1594_PANGAEA_767433/Details"
GATEWAY_INTERFACE	"CGI/1.1"
SERVER_PROTOCOL	"HTTP/1.1"
REQUEST_METHOD	"GET"
QUERY_STRING	""
REQUEST_URI	"/Record/pangaea_https___doi_org_10_1594_PANGAEA_767433/Details"
SCRIPT_NAME	"/index.php"
PHP_SELF	"/index.php"
REQUEST_TIME_FLOAT	1790951452.1714
REQUEST_TIME	1790951452

Environment Variables empty

Registered Handlers

0. Whoops\Handler\PrettyPageHandler

Environment & details:

GET Data empty

POST Data empty

Files empty

Key	Value
ui	"standard"
language	"de"
VUFIND_SESSION	"2f7494224b0dfdefbf0a6da1fed2f510"

Session

Key	Value
__Laminas	array:2 [`"_REQUEST_ACCESS_TIME" => 1790951452.1774 "_VALID" => array:1 [ "Laminas\Session\Validator\Id" => "2f7494224b0dfdefbf0a6da1fed2f510" ]`]
SessionState	Laminas\Stdlib\ArrayObject {#938}
FlashMessenger	Laminas\Stdlib\ArrayObject {#1433}
SessionHelper	Laminas\Stdlib\ArrayObject {#1763}

Server/Request Data

Key	Value
REDIRECT_VUFIND_LOCAL_DIR	"/usr/local/vufind/local"
REDIRECT_HTTPS	"on"
REDIRECT_SSL_TLS_SNI	"info.umar.mx"
REDIRECT_STATUS	"200"
VUFIND_LOCAL_DIR	"/usr/local/vufind/local"
HTTPS	"on"
SSL_TLS_SNI	"info.umar.mx"
HTTP_ACCEPT	"/"
HTTP_USER_AGENT	"Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)"
HTTP_COOKIE	"ui=standard; language=de; VUFIND_SESSION=2f7494224b0dfdefbf0a6da1fed2f510"
HTTP_ACCEPT_ENCODING	"gzip, br, zstd, deflate"
HTTP_HOST	"info.umar.mx"
PATH	"/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/snap/bin"
SERVER_SIGNATURE	"<address>Apache/2.4.66 (Ubuntu) Server at info.umar.mx Port 443</address>\n"
SERVER_SOFTWARE	"Apache/2.4.66 (Ubuntu)"
SERVER_NAME	"info.umar.mx"
SERVER_ADDR	"200.23.222.19"
SERVER_PORT	"443"
REMOTE_ADDR	"216.73.217.142"
DOCUMENT_ROOT	"/usr/local/vufind/public"
REQUEST_SCHEME	"https"
CONTEXT_PREFIX	""
CONTEXT_DOCUMENT_ROOT	"/usr/local/vufind/public"
SERVER_ADMIN	"admin@localhost"
SCRIPT_FILENAME	"/usr/local/vufind/public/index.php"
REMOTE_PORT	"62586"
REDIRECT_URL	"/Record/pangaea_https___doi_org_10_1594_PANGAEA_767433/Details"
GATEWAY_INTERFACE	"CGI/1.1"
SERVER_PROTOCOL	"HTTP/1.1"
REQUEST_METHOD	"GET"
QUERY_STRING	""
REQUEST_URI	"/Record/pangaea_https___doi_org_10_1594_PANGAEA_767433/Details"
SCRIPT_NAME	"/index.php"
PHP_SELF	"/index.php"
REQUEST_TIME_FLOAT	1790951452.1714
REQUEST_TIME	1790951452

Environment Variables empty

Registered Handlers

0. Whoops\Handler\PrettyPageHandler

Ähnliche Einträge

Environment & details:

Environment & details: