Individual codes, GenBank accession numbers and GenBank accession links for Mediterranean sponges
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| Main Authors: | , , , , |
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| Format: | Dataset Open Access |
| Language: | en |
| Published: |
PANGAEA
2015
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| _version_ | 1867169108899921920 |
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| author | Horn, Hannes Cheng, Cheng Edrada-Ebel, RuAngelie Hentschel, Ute Abdelmohsen, Usama Ramadan |
| author_facet | Horn, Hannes Cheng, Cheng Edrada-Ebel, RuAngelie Hentschel, Ute Abdelmohsen, Usama Ramadan |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | Metabolomic analysis has shown the chemical richness of the sponge-associated actinomycetes Streptomyces sp. SBT349, Nonomureae sp. SBT364, and Nocardiopsis sp. SBT366. The genomes of these actinomycetes were sequenced and the genomic potential for secondary metabolism was evaluated. Their draft genomes have sizes of 8.0, 10, and 5.8Mb having 687, 367, and 179 contigs with a GC content of 71.6, 70.7, and 72.7%, respectively. Moreover, antiSMASH 3.0 predicted 108, 149, and 75 secondary metabolite gene clusters, respectively which highlight the metabolic capacity of the three actinomycete species to produce diverse classes of natural products. |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_855521 |
| institution | PANGAEA |
| language | en |
| publishDate | 2015 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Individual codes, GenBank accession numbers and GenBank accession links for Mediterranean sponges Horn, Hannes Cheng, Cheng Edrada-Ebel, RuAngelie Hentschel, Ute Abdelmohsen, Usama Ramadan Accession number; Accession number, link; Area/locality; Date/Time of event; Depth, bottom/max; Depth, top/min; DIVER; Latitude of event; Longitude of event; Milos_052013; Sample code/label; Sampling by diver; Species code; Sponge Milos Collection Metabolomic analysis has shown the chemical richness of the sponge-associated actinomycetes Streptomyces sp. SBT349, Nonomureae sp. SBT364, and Nocardiopsis sp. SBT366. The genomes of these actinomycetes were sequenced and the genomic potential for secondary metabolism was evaluated. Their draft genomes have sizes of 8.0, 10, and 5.8Mb having 687, 367, and 179 contigs with a GC content of 71.6, 70.7, and 72.7%, respectively. Moreover, antiSMASH 3.0 predicted 108, 149, and 75 secondary metabolite gene clusters, respectively which highlight the metabolic capacity of the three actinomycete species to produce diverse classes of natural products. |
| title | Individual codes, GenBank accession numbers and GenBank accession links for Mediterranean sponges |
| topic | Accession number; Accession number, link; Area/locality; Date/Time of event; Depth, bottom/max; Depth, top/min; DIVER; Latitude of event; Longitude of event; Milos_052013; Sample code/label; Sampling by diver; Species code; Sponge Milos Collection |
| url | https://doi.org/10.1594/PANGAEA.855521 |