Total V9 rDNA information organized at the OTU level for the Tara Oceans Expedition (2009-2012)
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PANGAEA
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| Autores principales: | , , , |
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| Formato: | Dataset Open Access |
| Lenguaje: | en |
| Publicado: |
PANGAEA
2017
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| Acceso en línea: | |
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| _version_ | 1867170997377957888 |
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| author | De Vargas, Colomban Audic, Stephane Tara Oceans Consortium, Coordinators Tara Oceans Expedition, Participants |
| author_facet | De Vargas, Colomban Audic, Stephane Tara Oceans Consortium, Coordinators Tara Oceans Expedition, Participants |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | The present data set provides a tab separated text file compressed in a zip archive. The file includes metadata for each TaraOceans V9 rDNA OTU including the following fields: md5sum = identifier of the representative (most abundant) sequence of the swarm; cid = identifier of the OTU; totab = total abundance of barcodes in this OTU; TARA_xxx = number of occurrences of barcodes in this OTU in each of the 334 samples;rtotab = total abundance of the representative barcode; pid = percentage identity of the representative barcode to the closest reference sequence from V9_PR2; lineage = taxonomic path assigned to the representative barcode ; refs = best hit reference sequence(s) with respect to the representative barcode ; taxogroup = high-taxonomic level assignation of the representative barcode. The file also includes three categories of functional annotations: (1) Chloroplast: yes, presence of permanent chloroplast; no, absence of permanent chloroplast ; NA, undetermined. (2) Symbiont (small partner): parasite, the species is a parasite; commensal, the species is a commensal; mutualist, the species is a mutualist symbiont, most often a microalgal taxon involved in photosymbiosis; no the species is not involved in a symbiosis as small partner; NA, undetermined. (3) Symbiont (host): photo, the host species relies on a mutualistic microalgal photosymbiont to survive (obligatory photosymbiosis); photo_falc, same as photo, but facultative relationship; photo_klep, the host species maintains chloroplasts from microalgal prey(s) to survive; photo_klep_falc, same as photo_klep, but facultative; Nfix, the host species must interact with a mutualistic symbiont providing N2 fixation to survive; Nfix_falc, same as Nfix, but facultative; no, the species is not involved in any mutualistic symbioses; NA, undetermined. |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_873275 |
| institution | PANGAEA |
| language | en |
| publishDate | 2017 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Total V9 rDNA information organized at the OTU level for the Tara Oceans Expedition (2009-2012) De Vargas, Colomban Audic, Stephane Tara Oceans Consortium, Coordinators Tara Oceans Expedition, Participants Fondation Tara Expeditions; FondTara; OCEANOMICS; Tara_Oceans_2009-2013; Tara Oceans Expedition; wOrld oCEAN biOressources, biotechnologies and Earth-systeM servICeS The present data set provides a tab separated text file compressed in a zip archive. The file includes metadata for each TaraOceans V9 rDNA OTU including the following fields: md5sum = identifier of the representative (most abundant) sequence of the swarm; cid = identifier of the OTU; totab = total abundance of barcodes in this OTU; TARA_xxx = number of occurrences of barcodes in this OTU in each of the 334 samples;rtotab = total abundance of the representative barcode; pid = percentage identity of the representative barcode to the closest reference sequence from V9_PR2; lineage = taxonomic path assigned to the representative barcode ; refs = best hit reference sequence(s) with respect to the representative barcode ; taxogroup = high-taxonomic level assignation of the representative barcode. The file also includes three categories of functional annotations: (1) Chloroplast: yes, presence of permanent chloroplast; no, absence of permanent chloroplast ; NA, undetermined. (2) Symbiont (small partner): parasite, the species is a parasite; commensal, the species is a commensal; mutualist, the species is a mutualist symbiont, most often a microalgal taxon involved in photosymbiosis; no the species is not involved in a symbiosis as small partner; NA, undetermined. (3) Symbiont (host): photo, the host species relies on a mutualistic microalgal photosymbiont to survive (obligatory photosymbiosis); photo_falc, same as photo, but facultative relationship; photo_klep, the host species maintains chloroplasts from microalgal prey(s) to survive; photo_klep_falc, same as photo_klep, but facultative; Nfix, the host species must interact with a mutualistic symbiont providing N2 fixation to survive; Nfix_falc, same as Nfix, but facultative; no, the species is not involved in any mutualistic symbioses; NA, undetermined. |
| title | Total V9 rDNA information organized at the OTU level for the Tara Oceans Expedition (2009-2012) |
| topic | Fondation Tara Expeditions; FondTara; OCEANOMICS; Tara_Oceans_2009-2013; Tara Oceans Expedition; wOrld oCEAN biOressources, biotechnologies and Earth-systeM servICeS |
| url | https://doi.org/10.1594/PANGAEA.873275 |