Genomic data of three-spined sticklebacks from Kiel (KIE) and Sylt (SYL), Germany around inducible differentially methylated sites in increasing salinity
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| Format: | Dataset Open Access |
| Sprache: | en |
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PANGAEA
2019
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| _version_ | 1867171291311636480 |
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| author | Meyer, Britta S Heckwolf, Melanie Häsler, Robert Höppner, Marc P Eizaguirre, Christophe Reusch, Thorsten B H |
| author_facet | Meyer, Britta S Heckwolf, Melanie Häsler, Robert Höppner, Marc P Eizaguirre, Christophe Reusch, Thorsten B H |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | This vcf file is generated from genomic data of three-spined sticklebacks from Kiel (KIE) and Sylt (SYL), Germany. The individuals from Kiel are S3, S4, S19, S20, S33, S34, S47, S48, S49, S50, S63, S64, S77, S78, S89, S90. The individuals from SYL are S9, S10, S17, S18, S31, S32, S45, S46, S59, S60, S61, S62, S73, S74, S87, S88. It contains high quality biallelic positions (GQ=20) and is filtered for minor allele frequencies of maf = 0.05, allows 40 % of missing data (13 individuals) and a read depth of >=5. Further this vcf file is subset to the inducible differentially methylated sites (DMS) (148sites) in increasing PSU (_33PSU) with 5 kilobases (kb) before and after DMS. With this file further calculations were performed to estimate the genetic differentiation (i.e. Fst) between the different populations (see manuscript indicated below). |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_909528 |
| institution | PANGAEA |
| language | en |
| publishDate | 2019 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Genomic data of three-spined sticklebacks from Kiel (KIE) and Sylt (SYL), Germany around inducible differentially methylated sites in increasing salinity Meyer, Britta S Heckwolf, Melanie Häsler, Robert Höppner, Marc P Eizaguirre, Christophe Reusch, Thorsten B H Baltic Sea; Local adaptation; population genomics; three-spined stickleback; VCF; Whole genome sequencing This vcf file is generated from genomic data of three-spined sticklebacks from Kiel (KIE) and Sylt (SYL), Germany. The individuals from Kiel are S3, S4, S19, S20, S33, S34, S47, S48, S49, S50, S63, S64, S77, S78, S89, S90. The individuals from SYL are S9, S10, S17, S18, S31, S32, S45, S46, S59, S60, S61, S62, S73, S74, S87, S88. It contains high quality biallelic positions (GQ=20) and is filtered for minor allele frequencies of maf = 0.05, allows 40 % of missing data (13 individuals) and a read depth of >=5. Further this vcf file is subset to the inducible differentially methylated sites (DMS) (148sites) in increasing PSU (_33PSU) with 5 kilobases (kb) before and after DMS. With this file further calculations were performed to estimate the genetic differentiation (i.e. Fst) between the different populations (see manuscript indicated below). |
| title | Genomic data of three-spined sticklebacks from Kiel (KIE) and Sylt (SYL), Germany around inducible differentially methylated sites in increasing salinity |
| topic | Baltic Sea; Local adaptation; population genomics; three-spined stickleback; VCF; Whole genome sequencing |
| url | https://doi.org/10.1594/PANGAEA.909528 |