Computed tomography analysis of multicorer SO268/2_122-1, core14
Fuente:
PANGAEA
Guardado en:
| Autores principales: | , , , , , |
|---|---|
| Formato: | Dataset Open Access |
| Lenguaje: | en |
| Publicado: |
PANGAEA
2020
|
| Materias: | |
| Acceso en línea: | |
| Etiquetas: |
Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
|
| _version_ | 1867172341348302848 |
|---|---|
| author | Titschack, Jürgen Yapan, Batuhan Çağrı Otte, Julia Marén Janssen, Felix Timann, Christian Lemke, Arne-Jörn |
| author_facet | Titschack, Jürgen Yapan, Batuhan Çağrı Otte, Julia Marén Janssen, Felix Timann, Christian Lemke, Arne-Jörn |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | Selected multicorer cores of R/V Sonne cruise SO268-2 were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters >~1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined. |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_924449 |
| institution | PANGAEA |
| language | en |
| publishDate | 2020 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Computed tomography analysis of multicorer SO268/2_122-1, core14 Titschack, Jürgen Yapan, Batuhan Çağrı Otte, Julia Marén Janssen, Felix Timann, Christian Lemke, Arne-Jörn Binary Object; Binary Object (File Size); bioturbation; Bioturbation; Clarion-Clipperton Fraction Zone, North East Pacific Ocean; Computer tomograph value; CT; DEPTH, sediment/rock; File content; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; manganese nodules; MUC-24; Multicorer with television; Nodules; Number of slice; Number of voxels, matrix sediment; SO268/2; SO268/2_122-1; Sonne_2; TVMUC; x-ray attenuation; X-ray attenuation, matrix sediment, maximum; X-ray attenuation, matrix sediment, mean; X-ray attenuation, matrix sediment, minimum; X-ray attenuation, matrix sediment, standard deviation Selected multicorer cores of R/V Sonne cruise SO268-2 were scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in x/y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format. The data were processed with the ZIB edition of the Amira software (version 2021.03; Stalling et al., 2005; http://amira.zib.de). Within Amira, the core liners, including about 2 mm of the core rims, were deleted from the data set. Mangan nodules with diameters >~1 mm, open bioturbation traces, an unidentified organism (only present in core SO268-2-200-1 MC18), the natural bioturbated and surficial homogenised sediment were segmented by a marker-based watershed segmentation and visualized in 3D. Subsequently, the sediment components were quantified (MaterialStatistics module; volume per slice) and the mean and standard deviation of the sediment x-ray attenuation (MaterialStatistics module; statistics per slice per label; to avoid marginal averaging effects the sediment label was reduced by three voxels) were determined. |
| title | Computed tomography analysis of multicorer SO268/2_122-1, core14 |
| topic | Binary Object; Binary Object (File Size); bioturbation; Bioturbation; Clarion-Clipperton Fraction Zone, North East Pacific Ocean; Computer tomograph value; CT; DEPTH, sediment/rock; File content; JPI Oceans - Ecological Aspects of Deep-Sea Mining; JPIO-MiningImpact; manganese nodules; MUC-24; Multicorer with television; Nodules; Number of slice; Number of voxels, matrix sediment; SO268/2; SO268/2_122-1; Sonne_2; TVMUC; x-ray attenuation; X-ray attenuation, matrix sediment, maximum; X-ray attenuation, matrix sediment, mean; X-ray attenuation, matrix sediment, minimum; X-ray attenuation, matrix sediment, standard deviation |
| url | https://doi.org/10.1594/PANGAEA.924449 |