Bacterial community composition in suspended particulate matter of Lake Chala from September 2013- January 2015
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| Format: | Dataset Open Access |
| Sprache: | en |
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PANGAEA
2020
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| _version_ | 1867171871455182848 |
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| author | Peterse, Francien van Bree, Loes G J Baxter, Allix J De Crop, Wannes van Grinsven, Sigrid Villanueva, Laura Verschuren, Dirk Sinninghe Damsté, Jaap S |
| author_facet | Peterse, Francien van Bree, Loes G J Baxter, Allix J De Crop, Wannes van Grinsven, Sigrid Villanueva, Laura Verschuren, Dirk Sinninghe Damsté, Jaap S |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | Vertical profiles of temperature, dissolved oxygen (DO), conductivity and pH in the water column of Lake Chala, a small (4.2 km2), deep (~90 m), and permanently stratified tropical crater lake at ~880 m above sea level in East Africa (3°19'S, 37°42'E), were measured at 2 m intervals through the upper 50 m of the water column at monthly intervals between September 2013 and January 2015. In the same time interval, suspended particulate matter (SPM) was collected monthly at 13 discrete depths by filtering 5-10L of water over pre-combusted glass fibre filters. A 1/32 section of the same SPM filters as used for brGDGT analysis was used for DNA extraction, after which 16S rRNA gene amplicon sequencing and quantification was performed to generate concentration-depth profiles of the monthly distribution and abundance of bacterial taxa. |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_924859 |
| institution | PANGAEA |
| language | en |
| publishDate | 2020 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Bacterial community composition in suspended particulate matter of Lake Chala from September 2013- January 2015 Peterse, Francien van Bree, Loes G J Baxter, Allix J De Crop, Wannes van Grinsven, Sigrid Villanueva, Laura Verschuren, Dirk Sinninghe Damsté, Jaap S 16S rRNA; Binary Object; Binary Object (Media Type); Branched GDGTs; File content; Lake_Chala; Lake Chala; Lake Chala, East Africa; MULT; Multiple investigations Vertical profiles of temperature, dissolved oxygen (DO), conductivity and pH in the water column of Lake Chala, a small (4.2 km2), deep (~90 m), and permanently stratified tropical crater lake at ~880 m above sea level in East Africa (3°19'S, 37°42'E), were measured at 2 m intervals through the upper 50 m of the water column at monthly intervals between September 2013 and January 2015. In the same time interval, suspended particulate matter (SPM) was collected monthly at 13 discrete depths by filtering 5-10L of water over pre-combusted glass fibre filters. A 1/32 section of the same SPM filters as used for brGDGT analysis was used for DNA extraction, after which 16S rRNA gene amplicon sequencing and quantification was performed to generate concentration-depth profiles of the monthly distribution and abundance of bacterial taxa. |
| title | Bacterial community composition in suspended particulate matter of Lake Chala from September 2013- January 2015 |
| topic | 16S rRNA; Binary Object; Binary Object (Media Type); Branched GDGTs; File content; Lake_Chala; Lake Chala; Lake Chala, East Africa; MULT; Multiple investigations |
| url | https://doi.org/10.1594/PANGAEA.924859 |