Operational taxonomic units of deep-sea fishes from environmental DNA collected during Ramon Margalef cruise BIOMAN 2018 to the Bay of Biscay, with links to accession numbers
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| Autores principales: | , , , , |
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| Formato: | Dataset Open Access |
| Lenguaje: | en |
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PANGAEA
2021
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| _version_ | 1867170110555291648 |
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| author | Canals, Oriol Mendibil, Iñaki Santos Mocoroa, María Irigoien, Xabier Rodríguez-Ezpeleta, Naiara |
| author_facet | Canals, Oriol Mendibil, Iñaki Santos Mocoroa, María Irigoien, Xabier Rodríguez-Ezpeleta, Naiara |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | Analysis of fish environmental DNA (DNA traces released into the environment in form of tissue, mucus, feces, etc.) from several oceanic vertical profiles (from the surface up to 2000 m depth) along the continental slope of the Bay of Biscay. We provide the geographical location of each vertical profile, the station at which each sample belongs to, the depth, date, and hour at which each sample was collected, if the sampling was carried out during day or nighttime, and the water volume filtered. The accession numbers to the raw data of the sequenced samples (available on BioProject ID insdc:PRJNA759107) are also detailed. All samples were obtained by deploying a rosette sampler, and the surface ones were also collected using the continuous clean circuit intake of the vessel. The final operational taxonomic unit counts (OTUs) of the fish species were based on sequencing the mitochondrial 12S rRNA gene on an Illumina MiSeq platform, and taxonomic assignment to the World Register of Marine Species (WoRMS) and a local database restricted to fish species of the Northeast Atlantic and Mediterranean areas. |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_935870 |
| institution | PANGAEA |
| language | en |
| publishDate | 2021 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Operational taxonomic units of deep-sea fishes from environmental DNA collected during Ramon Margalef cruise BIOMAN 2018 to the Bay of Biscay, with links to accession numbers Canals, Oriol Mendibil, Iñaki Santos Mocoroa, María Irigoien, Xabier Rodríguez-Ezpeleta, Naiara Accession number, genetics; Alepocephalus agassizii, operational taxonomic unit; Anguilla anguilla, operational taxonomic unit; Aphanopus carbo, operational taxonomic unit; Aphia minuta, operational taxonomic unit; Argentina silus, operational taxonomic unit; Bathylagus euryops, operational taxonomic unit; Bathytroctes microlepis, operational taxonomic unit; Bay of Biscay; Benthosema glaciale, operational taxonomic unit; BIOMAN_2018; BIOMAN_2018_PV_111-1; BIOMAN_2018_PV_136-1; BIOMAN_2018_PV_236-1; BIOMAN_2018_PV_37-1; BIOMAN_2018_PV_402-1; BIOMAN_2018_PV_54-1; BIOMAN_2018_PV_555-1; BIOMAN_2018_PV_629-1; Bio-Rosette; BRO; Capros aper, operational taxonomic unit; Centroscymnus crepidater, operational taxonomic unit; Cetorhinus maximus, operational taxonomic unit; Chelon sp., operational taxonomic unit; Ctenolabrus rupestris, operational taxonomic unit; Cyclothone microdon, operational taxonomic unit; DATE/TIME; DEPTH, water; Dicentrarchus labrax, operational taxonomic unit; Diplodus sargus, operational taxonomic unit; EDAMAME; eDNA metabarcoding; Engraulis encrasicolus, operational taxonomic unit; environmental DNA; Environmental DNA based approaches for marine and aquatic monitoring and evaluation; Epigonus telescopus, operational taxonomic unit; Euthynnus alletteratus, operational taxonomic unit; Event label; Field observation; fish diversity; fish ecology; Gadiculus thori, operational taxonomic unit; Helicolenus dactylopterus, operational taxonomic unit; Katsuwonus pelamis, operational taxonomic unit; Lamna nasus, operational taxonomic unit; Lampanyctus crocodilus, operational taxonomic unit; Latitude of event; Lepidion eques, operational taxonomic unit; Leucoraja naevus, operational taxonomic unit; Longitude of event; Lophius piscatorius, operational taxonomic unit; Maurolicus muelleri, operational taxonomic unit; Merluccius merluccius, operational taxonomic unit; Mesopelagic ecosystem; Metabarcoding; Micromesistius poutassou, operational taxonomic unit; Mola mola, operational taxonomic unit; Notacanthus chemnitzii, operational taxonomic unit; Notoscopelus kroyeri, operational taxonomic unit; Pagellus sp., operational taxonomic unit; Pagrus major, operational taxonomic unit; Phoxinus sp., operational taxonomic unit; Pisces; Pomatoschistus sp., operational taxonomic unit; Prionace glauca, operational taxonomic unit; PV_111; PV_136; PV_236; PV_37; PV_402; PV_54; PV_555; PV_629; Ramon Margalef; Reinhardtius hippoglossoides, operational taxonomic unit; Salmo trutta, operational taxonomic unit; Sample ID; Sardina pilchardus, operational taxonomic unit; Scomber sp., operational taxonomic unit; Scophthalmus maximus, operational taxonomic unit; Sigmops bathyphilus, operational taxonomic unit; Solea solea, operational taxonomic unit; Sprattus sprattus, operational taxonomic unit; Station label; Stomias boa boa, operational taxonomic unit; SUMMER; Sustainable Management of Mesopelagic Resources; Thunnus sp., operational taxonomic unit; Time of day; Trachurus trachurus, operational taxonomic unit; Trisopterus sp., operational taxonomic unit; vertical migration; Water volume, filtered; Xenodermichthys copei, operational taxonomic unit; Xiphias gladius, operational taxonomic unit Analysis of fish environmental DNA (DNA traces released into the environment in form of tissue, mucus, feces, etc.) from several oceanic vertical profiles (from the surface up to 2000 m depth) along the continental slope of the Bay of Biscay. We provide the geographical location of each vertical profile, the station at which each sample belongs to, the depth, date, and hour at which each sample was collected, if the sampling was carried out during day or nighttime, and the water volume filtered. The accession numbers to the raw data of the sequenced samples (available on BioProject ID insdc:PRJNA759107) are also detailed. All samples were obtained by deploying a rosette sampler, and the surface ones were also collected using the continuous clean circuit intake of the vessel. The final operational taxonomic unit counts (OTUs) of the fish species were based on sequencing the mitochondrial 12S rRNA gene on an Illumina MiSeq platform, and taxonomic assignment to the World Register of Marine Species (WoRMS) and a local database restricted to fish species of the Northeast Atlantic and Mediterranean areas. |
| title | Operational taxonomic units of deep-sea fishes from environmental DNA collected during Ramon Margalef cruise BIOMAN 2018 to the Bay of Biscay, with links to accession numbers |
| topic | Accession number, genetics; Alepocephalus agassizii, operational taxonomic unit; Anguilla anguilla, operational taxonomic unit; Aphanopus carbo, operational taxonomic unit; Aphia minuta, operational taxonomic unit; Argentina silus, operational taxonomic unit; Bathylagus euryops, operational taxonomic unit; Bathytroctes microlepis, operational taxonomic unit; Bay of Biscay; Benthosema glaciale, operational taxonomic unit; BIOMAN_2018; BIOMAN_2018_PV_111-1; BIOMAN_2018_PV_136-1; BIOMAN_2018_PV_236-1; BIOMAN_2018_PV_37-1; BIOMAN_2018_PV_402-1; BIOMAN_2018_PV_54-1; BIOMAN_2018_PV_555-1; BIOMAN_2018_PV_629-1; Bio-Rosette; BRO; Capros aper, operational taxonomic unit; Centroscymnus crepidater, operational taxonomic unit; Cetorhinus maximus, operational taxonomic unit; Chelon sp., operational taxonomic unit; Ctenolabrus rupestris, operational taxonomic unit; Cyclothone microdon, operational taxonomic unit; DATE/TIME; DEPTH, water; Dicentrarchus labrax, operational taxonomic unit; Diplodus sargus, operational taxonomic unit; EDAMAME; eDNA metabarcoding; Engraulis encrasicolus, operational taxonomic unit; environmental DNA; Environmental DNA based approaches for marine and aquatic monitoring and evaluation; Epigonus telescopus, operational taxonomic unit; Euthynnus alletteratus, operational taxonomic unit; Event label; Field observation; fish diversity; fish ecology; Gadiculus thori, operational taxonomic unit; Helicolenus dactylopterus, operational taxonomic unit; Katsuwonus pelamis, operational taxonomic unit; Lamna nasus, operational taxonomic unit; Lampanyctus crocodilus, operational taxonomic unit; Latitude of event; Lepidion eques, operational taxonomic unit; Leucoraja naevus, operational taxonomic unit; Longitude of event; Lophius piscatorius, operational taxonomic unit; Maurolicus muelleri, operational taxonomic unit; Merluccius merluccius, operational taxonomic unit; Mesopelagic ecosystem; Metabarcoding; Micromesistius poutassou, operational taxonomic unit; Mola mola, operational taxonomic unit; Notacanthus chemnitzii, operational taxonomic unit; Notoscopelus kroyeri, operational taxonomic unit; Pagellus sp., operational taxonomic unit; Pagrus major, operational taxonomic unit; Phoxinus sp., operational taxonomic unit; Pisces; Pomatoschistus sp., operational taxonomic unit; Prionace glauca, operational taxonomic unit; PV_111; PV_136; PV_236; PV_37; PV_402; PV_54; PV_555; PV_629; Ramon Margalef; Reinhardtius hippoglossoides, operational taxonomic unit; Salmo trutta, operational taxonomic unit; Sample ID; Sardina pilchardus, operational taxonomic unit; Scomber sp., operational taxonomic unit; Scophthalmus maximus, operational taxonomic unit; Sigmops bathyphilus, operational taxonomic unit; Solea solea, operational taxonomic unit; Sprattus sprattus, operational taxonomic unit; Station label; Stomias boa boa, operational taxonomic unit; SUMMER; Sustainable Management of Mesopelagic Resources; Thunnus sp., operational taxonomic unit; Time of day; Trachurus trachurus, operational taxonomic unit; Trisopterus sp., operational taxonomic unit; vertical migration; Water volume, filtered; Xenodermichthys copei, operational taxonomic unit; Xiphias gladius, operational taxonomic unit |
| url | https://doi.org/10.1594/PANGAEA.935870 |