CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment GeoB12738-1
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| Autores principales: | , , , , , |
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| Formato: | Dataset Open Access |
| Lenguaje: | en |
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PANGAEA
2022
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| _version_ | 1867171880832598016 |
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| author | Titschack, Jürgen Schmitt, Kira Baum, Daniel Wienberg, Claudia Timann, Christian Lemke, Arne-Jörn |
| author_facet | Titschack, Jürgen Schmitt, Kira Baum, Daniel Wienberg, Claudia Timann, Christian Lemke, Arne-Jörn |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | Lophelia pertusa colony fragment GeoB12738-1 was sampled from a living colony at 34°59.98'N, 07°04.51' in 738 m water depth with the MARUM ROV CHEROKEE during Pelagia cruise 64PE284 in the Meknes mud vulcano area, Gulf of Cádiz. The colony fragment was scanned using a Toshiba Aquilion 64™ computer tomograph (CT) at the hospital Klinikum Bremen-Mitte, with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in the x and y directions and 0.5 mm resolution in the z direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique. Polyp-cavity (calice) segmentation was perfromed with the ZIB edition of the Amira software (Stalling et al., 2005; http://amira.zib.de) based on the new method describes in Schmitt et al. (submitted). |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_947334 |
| institution | PANGAEA |
| language | en |
| publishDate | 2022 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment GeoB12738-1 Titschack, Jürgen Schmitt, Kira Baum, Daniel Wienberg, Claudia Timann, Christian Lemke, Arne-Jörn 58735; 64PE284; Binary Object; Binary Object (File Size); Binary Object (Media Type); calice segmentation; Center for Marine Environmental Sciences; Computed Tomography; Desmophyllum pertusum; GeoB12738-1; Lophelia pertusa; MARUM; Meknes Carbonate Mound Provinces, small mounds N of Meknes mud volcano; Pelagia; polyp-cavity segmentation; Remote operated vehicle; ROV Lophelia pertusa colony fragment GeoB12738-1 was sampled from a living colony at 34°59.98'N, 07°04.51' in 738 m water depth with the MARUM ROV CHEROKEE during Pelagia cruise 64PE284 in the Meknes mud vulcano area, Gulf of Cádiz. The colony fragment was scanned using a Toshiba Aquilion 64™ computer tomograph (CT) at the hospital Klinikum Bremen-Mitte, with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stacks have a resolution of 0.35 mm in the x and y directions and 0.5 mm resolution in the z direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique. Polyp-cavity (calice) segmentation was perfromed with the ZIB edition of the Amira software (Stalling et al., 2005; http://amira.zib.de) based on the new method describes in Schmitt et al. (submitted). |
| title | CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment GeoB12738-1 |
| topic | 58735; 64PE284; Binary Object; Binary Object (File Size); Binary Object (Media Type); calice segmentation; Center for Marine Environmental Sciences; Computed Tomography; Desmophyllum pertusum; GeoB12738-1; Lophelia pertusa; MARUM; Meknes Carbonate Mound Provinces, small mounds N of Meknes mud volcano; Pelagia; polyp-cavity segmentation; Remote operated vehicle; ROV |
| url | https://doi.org/10.1594/PANGAEA.947334 |