Bacterial diversity of Canadian Prairie groundwater ecosystems
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| Natura: | Dataset Open Access |
| Lingua: | en |
| Pubblicazione: |
PANGAEA
2022
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| _version_ | 1867169455930343424 |
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| author | Ruff, S Emil Humez, Pauline Hrabe de Angelis, Isabella Diao, Muhe Nightingale, Michael Cho, Sara Connors, Liam Kuloyo, Olukayode O Seltzer, Alan Bowman, Samuel Wankel, Scott D McClain, Cynthia N Mayer, Bernhard Strous, Marc |
| author_facet | Ruff, S Emil Humez, Pauline Hrabe de Angelis, Isabella Diao, Muhe Nightingale, Michael Cho, Sara Connors, Liam Kuloyo, Olukayode O Seltzer, Alan Bowman, Samuel Wankel, Scott D McClain, Cynthia N Mayer, Bernhard Strous, Marc |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | Groundwater ecosystems are globally widespread yet still poorly understood. We investigated the microbiology of groundwater samples from various monitoring wells (<250m depth) located in 14 aquifers in the Canadian Prairie. This dataset contains bacterial community diversity indices based on 16S rRNA gene amplicons retrieved from 119 groundwater samples of aquifers in the Canadian Prairie, collected between 2015 and 2020. The study area comprised 14 major aquifers and a geographic area of ~210.000 km2. The goal of the study was to understand the links between the biogeochemistry and microbial ecology of groundwater ecosystems in diverse geological settings on a broad spatial scale. Details concerning DNA extraction, sequencing and sequence analyses can be found in the associated publication by Ruff et al. 2023. |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_952402 |
| institution | PANGAEA |
| language | en |
| publishDate | 2022 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Bacterial diversity of Canadian Prairie groundwater ecosystems Ruff, S Emil Humez, Pauline Hrabe de Angelis, Isabella Diao, Muhe Nightingale, Michael Cho, Sara Connors, Liam Kuloyo, Olukayode O Seltzer, Alan Bowman, Samuel Wankel, Scott D McClain, Cynthia N Mayer, Bernhard Strous, Marc Accession number, genetics; Amplicon sequence variant, absolute single sequence; Amplicon sequence variant, relative single sequence; Amplicon sequence variant, richness; aquifer; biogeochemistry; Canadian Prairie; Chao 1 richness; communities; DATE/TIME; Event label; Field measurement; GOWN_Airdrie; GOWN_Barons; GOWN_Barrhead; GOWN_Beaverlodge; GOWN_Bigstone; GOWN_Buck_Deep; GOWN_Buck_Lake; GOWN_Canmore; GOWN_Canmore_Tourist; GOWN_Carmangay; GOWN_Carseland; GOWN_Cavendish; GOWN_Cluny_North; GOWN_Cluny_South; GOWN_Cochrane_Deep; GOWN_Cochrane_Shallow; GOWN_Crestomere; GOWN_Crossfield; GOWN_Cushing_Lake; GOWN_Cynthia; GOWN_Del_Bonita; GOWN_Devon_Botanical; GOWN_Devon_Botanical_Garden; GOWN_Dewberry; GOWN_Duvernay; GOWN_Elnora; GOWN_Elnora_6; GOWN_Fairview; GOWN_Ferintosh; GOWN_Forty_Mile_Coulee; GOWN_Gem_66_7; GOWN_Grimshaw_Mercier; GOWN_Grimshaw_Nissan; GOWN_Hamilin; GOWN_Hand_Hills; GOWN_Hardisty; GOWN_Hardisty_Airport; GOWN_Hays_East; GOWN_Irricana; GOWN_Kehiwin_Lake; GOWN_KEHO_Lake; GOWN_Kirkpatrick; GOWN_Leedale_Deep; GOWN_Leedale_Shallow; GOWN_Lloydminster; GOWN_McNally; GOWN_Meander_River; GOWN_Metiskow; GOWN_Milk_River; GOWN_Moose_Lake; GOWN_Morningside; GOWN_Okotoks_N; GOWN_Oldman_Dam; GOWN_Olds; GOWN_Orton; GOWN_Pakowi; GOWN_Pine_Lake; GOWN_Ponoka; GOWN_Raven; GOWN_Redlands; GOWN_Rich_Lake; GOWN_Rocky_Mt._House; GOWN_Rockyford; GOWN_Rollyview; GOWN_Rosebud; GOWN_Ross_Creek; GOWN_Sibbald; GOWN_Sion_3; GOWN_Smith; GOWN_Smith_Coulee; GOWN_Sounding_Creek; GOWN_Stettler_North; GOWN_Stettler_South; GOWN_Sundre_North; GOWN_Sundre_South; GOWN_Three_Hills; GOWN_Three_Hills_RCA; GOWN_Viking; GOWN_Wainwright; GOWN_Warburg; GOWN_Warner; GOWN_Warner_North; GOWN_Wetaskiwin; GOWN_Zama_North; groundwater; Inverse Simpson index of diversity; LATITUDE; LONGITUDE; microbes; Reads; Sample code/label; Sample code/label 2; Sequence identifier; Shannon Diversity Index; Well; Well, identifier Groundwater ecosystems are globally widespread yet still poorly understood. We investigated the microbiology of groundwater samples from various monitoring wells (<250m depth) located in 14 aquifers in the Canadian Prairie. This dataset contains bacterial community diversity indices based on 16S rRNA gene amplicons retrieved from 119 groundwater samples of aquifers in the Canadian Prairie, collected between 2015 and 2020. The study area comprised 14 major aquifers and a geographic area of ~210.000 km2. The goal of the study was to understand the links between the biogeochemistry and microbial ecology of groundwater ecosystems in diverse geological settings on a broad spatial scale. Details concerning DNA extraction, sequencing and sequence analyses can be found in the associated publication by Ruff et al. 2023. |
| title | Bacterial diversity of Canadian Prairie groundwater ecosystems |
| topic | Accession number, genetics; Amplicon sequence variant, absolute single sequence; Amplicon sequence variant, relative single sequence; Amplicon sequence variant, richness; aquifer; biogeochemistry; Canadian Prairie; Chao 1 richness; communities; DATE/TIME; Event label; Field measurement; GOWN_Airdrie; GOWN_Barons; GOWN_Barrhead; GOWN_Beaverlodge; GOWN_Bigstone; GOWN_Buck_Deep; GOWN_Buck_Lake; GOWN_Canmore; GOWN_Canmore_Tourist; GOWN_Carmangay; GOWN_Carseland; GOWN_Cavendish; GOWN_Cluny_North; GOWN_Cluny_South; GOWN_Cochrane_Deep; GOWN_Cochrane_Shallow; GOWN_Crestomere; GOWN_Crossfield; GOWN_Cushing_Lake; GOWN_Cynthia; GOWN_Del_Bonita; GOWN_Devon_Botanical; GOWN_Devon_Botanical_Garden; GOWN_Dewberry; GOWN_Duvernay; GOWN_Elnora; GOWN_Elnora_6; GOWN_Fairview; GOWN_Ferintosh; GOWN_Forty_Mile_Coulee; GOWN_Gem_66_7; GOWN_Grimshaw_Mercier; GOWN_Grimshaw_Nissan; GOWN_Hamilin; GOWN_Hand_Hills; GOWN_Hardisty; GOWN_Hardisty_Airport; GOWN_Hays_East; GOWN_Irricana; GOWN_Kehiwin_Lake; GOWN_KEHO_Lake; GOWN_Kirkpatrick; GOWN_Leedale_Deep; GOWN_Leedale_Shallow; GOWN_Lloydminster; GOWN_McNally; GOWN_Meander_River; GOWN_Metiskow; GOWN_Milk_River; GOWN_Moose_Lake; GOWN_Morningside; GOWN_Okotoks_N; GOWN_Oldman_Dam; GOWN_Olds; GOWN_Orton; GOWN_Pakowi; GOWN_Pine_Lake; GOWN_Ponoka; GOWN_Raven; GOWN_Redlands; GOWN_Rich_Lake; GOWN_Rocky_Mt._House; GOWN_Rockyford; GOWN_Rollyview; GOWN_Rosebud; GOWN_Ross_Creek; GOWN_Sibbald; GOWN_Sion_3; GOWN_Smith; GOWN_Smith_Coulee; GOWN_Sounding_Creek; GOWN_Stettler_North; GOWN_Stettler_South; GOWN_Sundre_North; GOWN_Sundre_South; GOWN_Three_Hills; GOWN_Three_Hills_RCA; GOWN_Viking; GOWN_Wainwright; GOWN_Warburg; GOWN_Warner; GOWN_Warner_North; GOWN_Wetaskiwin; GOWN_Zama_North; groundwater; Inverse Simpson index of diversity; LATITUDE; LONGITUDE; microbes; Reads; Sample code/label; Sample code/label 2; Sequence identifier; Shannon Diversity Index; Well; Well, identifier |
| url | https://doi.org/10.1594/PANGAEA.952402 |