Relative abundances of bacterial amplicon sequence variants (ASV) from Canadian Pairie groundwater ecosystems
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| Main Authors: | , , , , , , , , , , , , , |
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| Format: | Dataset Open Access |
| Language: | en |
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PANGAEA
2022
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| _version_ | 1867169455942926336 |
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| author | Ruff, S Emil Humez, Pauline Hrabe de Angelis, Isabella Diao, Muhe Nightingale, Michael Cho, Sara Connors, Liam Kuloyo, Olukayode O Seltzer, Alan Bowman, Samuel Wankel, Scott D McClain, Cynthia N Mayer, Bernhard Strous, Marc |
| author_facet | Ruff, S Emil Humez, Pauline Hrabe de Angelis, Isabella Diao, Muhe Nightingale, Michael Cho, Sara Connors, Liam Kuloyo, Olukayode O Seltzer, Alan Bowman, Samuel Wankel, Scott D McClain, Cynthia N Mayer, Bernhard Strous, Marc |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | Groundwater ecosystems are globally widespread yet still poorly understood. We investigated the microbiology of >100 groundwater samples from 90 monitoring wells (<250m depth) located in 14 aquifers in the Canadian Prairie. This dataset contains relative abundances of bacterial lineages based on 16S rRNA gene amplicons retrieved from 119 groundwater samples of aquifers in the Canadian Prairie, collected between 2015 and 2020. The study area comprised 14 major aquifers and a geographic area of ~210.000 km2. The goal of the study was to understand the links between the biogeochemistry and microbial ecology of groundwater ecosystems in diverse geological settings on a broad spatial scale. Details concerning DNA extraction, sequencing and sequence analyses can be found in the associated publication by Ruff et al. 2023. |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_952419 |
| institution | PANGAEA |
| language | en |
| publishDate | 2022 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Relative abundances of bacterial amplicon sequence variants (ASV) from Canadian Pairie groundwater ecosystems Ruff, S Emil Humez, Pauline Hrabe de Angelis, Isabella Diao, Muhe Nightingale, Michael Cho, Sara Connors, Liam Kuloyo, Olukayode O Seltzer, Alan Bowman, Samuel Wankel, Scott D McClain, Cynthia N Mayer, Bernhard Strous, Marc Accession number, genetics; Amplicon sequence variant; aquifer; biogeochemistry; Canadian Prairie; Class; communities; DATE/TIME; Event label; Family; Field measurement; Genus; GOWN_Airdrie; GOWN_Barons; GOWN_Barrhead; GOWN_Beaverlodge; GOWN_Bigstone; GOWN_Buck_Deep; GOWN_Buck_Lake; GOWN_Canmore; GOWN_Canmore_Tourist; GOWN_Carmangay; GOWN_Carseland; GOWN_Cavendish; GOWN_Cluny_North; GOWN_Cluny_South; GOWN_Cochrane_Deep; GOWN_Cochrane_Shallow; GOWN_Crestomere; GOWN_Crossfield; GOWN_Cushing_Lake; GOWN_Cynthia; GOWN_Del_Bonita; GOWN_Devon_Botanical; GOWN_Devon_Botanical_Garden; GOWN_Dewberry; GOWN_Duvernay; GOWN_Elnora; GOWN_Elnora_6; GOWN_Fairview; GOWN_Ferintosh; GOWN_Forty_Mile_Coulee; GOWN_Gem_66_7; GOWN_Grimshaw_Mercier; GOWN_Grimshaw_Nissan; GOWN_Hamilin; GOWN_Hand_Hills; GOWN_Hardisty; GOWN_Hardisty_Airport; GOWN_Hays_East; GOWN_Irricana; GOWN_Kehiwin_Lake; GOWN_KEHO_Lake; GOWN_Kirkpatrick; GOWN_Leedale_Deep; GOWN_Leedale_Shallow; GOWN_Lloydminster; GOWN_McNally; GOWN_Meander_River; GOWN_Metiskow; GOWN_Milk_River; GOWN_Moose_Lake; GOWN_Morningside; GOWN_Okotoks_N; GOWN_Oldman_Dam; GOWN_Olds; GOWN_Orton; GOWN_Pakowi; GOWN_Pine_Lake; GOWN_Ponoka; GOWN_Raven; GOWN_Redlands; GOWN_Rich_Lake; GOWN_Rocky_Mt._House; GOWN_Rockyford; GOWN_Rollyview; GOWN_Rosebud; GOWN_Ross_Creek; GOWN_Sibbald; GOWN_Sion_3; GOWN_Smith; GOWN_Smith_Coulee; GOWN_Sounding_Creek; GOWN_Stettler_North; GOWN_Stettler_South; GOWN_Sundre_North; GOWN_Sundre_South; GOWN_Three_Hills; GOWN_Three_Hills_RCA; GOWN_Viking; GOWN_Wainwright; GOWN_Warburg; GOWN_Warner; GOWN_Warner_North; GOWN_Wetaskiwin; GOWN_Zama_North; groundwater; Kingdom; LATITUDE; LONGITUDE; microbes; Order; Phylum; Sample code/label; Sample code/label 2; Sequence abundance; Sequence identifier; Species; Well; Well, identifier Groundwater ecosystems are globally widespread yet still poorly understood. We investigated the microbiology of >100 groundwater samples from 90 monitoring wells (<250m depth) located in 14 aquifers in the Canadian Prairie. This dataset contains relative abundances of bacterial lineages based on 16S rRNA gene amplicons retrieved from 119 groundwater samples of aquifers in the Canadian Prairie, collected between 2015 and 2020. The study area comprised 14 major aquifers and a geographic area of ~210.000 km2. The goal of the study was to understand the links between the biogeochemistry and microbial ecology of groundwater ecosystems in diverse geological settings on a broad spatial scale. Details concerning DNA extraction, sequencing and sequence analyses can be found in the associated publication by Ruff et al. 2023. |
| title | Relative abundances of bacterial amplicon sequence variants (ASV) from Canadian Pairie groundwater ecosystems |
| topic | Accession number, genetics; Amplicon sequence variant; aquifer; biogeochemistry; Canadian Prairie; Class; communities; DATE/TIME; Event label; Family; Field measurement; Genus; GOWN_Airdrie; GOWN_Barons; GOWN_Barrhead; GOWN_Beaverlodge; GOWN_Bigstone; GOWN_Buck_Deep; GOWN_Buck_Lake; GOWN_Canmore; GOWN_Canmore_Tourist; GOWN_Carmangay; GOWN_Carseland; GOWN_Cavendish; GOWN_Cluny_North; GOWN_Cluny_South; GOWN_Cochrane_Deep; GOWN_Cochrane_Shallow; GOWN_Crestomere; GOWN_Crossfield; GOWN_Cushing_Lake; GOWN_Cynthia; GOWN_Del_Bonita; GOWN_Devon_Botanical; GOWN_Devon_Botanical_Garden; GOWN_Dewberry; GOWN_Duvernay; GOWN_Elnora; GOWN_Elnora_6; GOWN_Fairview; GOWN_Ferintosh; GOWN_Forty_Mile_Coulee; GOWN_Gem_66_7; GOWN_Grimshaw_Mercier; GOWN_Grimshaw_Nissan; GOWN_Hamilin; GOWN_Hand_Hills; GOWN_Hardisty; GOWN_Hardisty_Airport; GOWN_Hays_East; GOWN_Irricana; GOWN_Kehiwin_Lake; GOWN_KEHO_Lake; GOWN_Kirkpatrick; GOWN_Leedale_Deep; GOWN_Leedale_Shallow; GOWN_Lloydminster; GOWN_McNally; GOWN_Meander_River; GOWN_Metiskow; GOWN_Milk_River; GOWN_Moose_Lake; GOWN_Morningside; GOWN_Okotoks_N; GOWN_Oldman_Dam; GOWN_Olds; GOWN_Orton; GOWN_Pakowi; GOWN_Pine_Lake; GOWN_Ponoka; GOWN_Raven; GOWN_Redlands; GOWN_Rich_Lake; GOWN_Rocky_Mt._House; GOWN_Rockyford; GOWN_Rollyview; GOWN_Rosebud; GOWN_Ross_Creek; GOWN_Sibbald; GOWN_Sion_3; GOWN_Smith; GOWN_Smith_Coulee; GOWN_Sounding_Creek; GOWN_Stettler_North; GOWN_Stettler_South; GOWN_Sundre_North; GOWN_Sundre_South; GOWN_Three_Hills; GOWN_Three_Hills_RCA; GOWN_Viking; GOWN_Wainwright; GOWN_Warburg; GOWN_Warner; GOWN_Warner_North; GOWN_Wetaskiwin; GOWN_Zama_North; groundwater; Kingdom; LATITUDE; LONGITUDE; microbes; Order; Phylum; Sample code/label; Sample code/label 2; Sequence abundance; Sequence identifier; Species; Well; Well, identifier |
| url | https://doi.org/10.1594/PANGAEA.952419 |