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| Main Authors: | , , , , , , , |
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| Format: | Dataset Open Access |
| Language: | en |
| Published: |
PANGAEA
2023
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| Subjects: | |
| Online Access: | https://doi.org/10.1594/PANGAEA.962217 |
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| _version_ | 1867169157215158272 |
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| author | Stenvers, Vanessa Hauss, Helena Schmittmann, Lara Bayer, Till Havermans, Charlotte Hentschel, Ute Sweetman, Andrew K Hoving, Henk-Jan T |
| author_facet | Stenvers, Vanessa Hauss, Helena Schmittmann, Lara Bayer, Till Havermans, Charlotte Hentschel, Ute Sweetman, Andrew K Hoving, Henk-Jan T |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | This dataset comprises gene expression data in the deep pelagic jellyfish Periphylla periphylla exposed to anthropogenic disturbance. Specifically, we tested the effects of ocean warming and sediment plumes from deep-sea mining during ex situ experiments, using Periphylla collected in the Lurefjord and Sognefjord, Norway, in 2021. Gene expression is given in normalised counts for each expressed transcript (for both the temperature and suspended sediment separately). Moreover, this dataset lists all significantly expressed transcripts and their summary statistics (e.g. log2 fold change), as identified with Likelihood Ratio Tests (LRT) in DESeq2 (Love et al. 2014), in addition to transcript annotations performed with Trinotate v3.2.1 searching the Blastx, Blastp, Pfam, UniProt-SwissProt, GO, eggNOG and KEGG databases (Bryant et al. 2017). |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_962217 |
| institution | PANGAEA |
| language | en |
| publishDate | 2023 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Transcriptome expression in Periphylla periphylla exposed to sediment plumes and increasing temperatures Stenvers, Vanessa Hauss, Helena Schmittmann, Lara Bayer, Till Havermans, Charlotte Hentschel, Ute Sweetman, Andrew K Hoving, Henk-Jan T BC; Binary Object; Binary Object (File Size); Binary Object (Media Type); Box corer; Cnidaria; Deep-sea mining; File content; GPF 20‐3_089H, NAPTRAM; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Jellyfish; Lurefjord_Norway_Periphylla_Sampling_1; North Atlantic Ocean; Norwegian fjord; ocean warming; Periphylla periphylla; SO279; SO279_8-1; Sognefjord_Norway_Periphylla_Sampling_2; Sonne_2; Transcriptomic analysis; Transcriptomics This dataset comprises gene expression data in the deep pelagic jellyfish Periphylla periphylla exposed to anthropogenic disturbance. Specifically, we tested the effects of ocean warming and sediment plumes from deep-sea mining during ex situ experiments, using Periphylla collected in the Lurefjord and Sognefjord, Norway, in 2021. Gene expression is given in normalised counts for each expressed transcript (for both the temperature and suspended sediment separately). Moreover, this dataset lists all significantly expressed transcripts and their summary statistics (e.g. log2 fold change), as identified with Likelihood Ratio Tests (LRT) in DESeq2 (Love et al. 2014), in addition to transcript annotations performed with Trinotate v3.2.1 searching the Blastx, Blastp, Pfam, UniProt-SwissProt, GO, eggNOG and KEGG databases (Bryant et al. 2017). |
| title | Transcriptome expression in Periphylla periphylla exposed to sediment plumes and increasing temperatures |
| topic | BC; Binary Object; Binary Object (File Size); Binary Object (Media Type); Box corer; Cnidaria; Deep-sea mining; File content; GPF 20‐3_089H, NAPTRAM; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Jellyfish; Lurefjord_Norway_Periphylla_Sampling_1; North Atlantic Ocean; Norwegian fjord; ocean warming; Periphylla periphylla; SO279; SO279_8-1; Sognefjord_Norway_Periphylla_Sampling_2; Sonne_2; Transcriptomic analysis; Transcriptomics |
| url | https://doi.org/10.1594/PANGAEA.962217 |