Unmodified foraminiferal raw eDNA data in form of 'reads' with ASV, OTU and taxonomic assignations from sediment surface samples at stations REF, IF20-12, IF20-10, IF20-18, IF20-01 and IF20-04
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PANGAEA
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| Auteurs principaux: | , , , , |
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| Format: | Dataset Open Access |
| Langue: | en |
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PANGAEA
2025
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| _version_ | 1867172195316269056 |
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| author | O'Brien, Phoebe Alexandra Joy Barrenechea Angeles, Ines Cermakova, Kristina Jarrossay, Renaud Polovodova Asteman, Irina |
| author_facet | O'Brien, Phoebe Alexandra Joy Barrenechea Angeles, Ines Cermakova, Kristina Jarrossay, Renaud Polovodova Asteman, Irina |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | The eDNA analysis was done using a DNeasy® PowerLyzer PowerSoil Kit (QIAGEN), processed using the DADA2 pipeline and the taxonomic assignations were estimated using a sequence bank at ID-Gene ecodiagnostics lab in Geneva Switzerland. |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_965589 |
| institution | PANGAEA |
| language | en |
| publishDate | 2025 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Unmodified foraminiferal raw eDNA data in form of 'reads' with ASV, OTU and taxonomic assignations from sediment surface samples at stations REF, IF20-12, IF20-10, IF20-18, IF20-01 and IF20-04 O'Brien, Phoebe Alexandra Joy Barrenechea Angeles, Ines Cermakova, Kristina Jarrossay, Renaud Polovodova Asteman, Irina eDNA metabarcoding; File content; Foraminiferal assemblages; Gemini Corer; heavy metals; Idefjorden, Sweden; IF20-01D; IF20-01E; IF20-01F; IF20-04C; IF20-04D; IF20-04F; IF20-10A; IF20-10B; IF20-10D; IF20-12A; IF20-12B; IF20-12C; IF20-18A; IF20-18C; IF20-18D; Metabarcoding; Pollutants; REF-B; REF-D; REF-E; Text file; Text file (File Size); Text file (Media Type) The eDNA analysis was done using a DNeasy® PowerLyzer PowerSoil Kit (QIAGEN), processed using the DADA2 pipeline and the taxonomic assignations were estimated using a sequence bank at ID-Gene ecodiagnostics lab in Geneva Switzerland. |
| title | Unmodified foraminiferal raw eDNA data in form of 'reads' with ASV, OTU and taxonomic assignations from sediment surface samples at stations REF, IF20-12, IF20-10, IF20-18, IF20-01 and IF20-04 |
| topic | eDNA metabarcoding; File content; Foraminiferal assemblages; Gemini Corer; heavy metals; Idefjorden, Sweden; IF20-01D; IF20-01E; IF20-01F; IF20-04C; IF20-04D; IF20-04F; IF20-10A; IF20-10B; IF20-10D; IF20-12A; IF20-12B; IF20-12C; IF20-18A; IF20-18C; IF20-18D; Metabarcoding; Pollutants; REF-B; REF-D; REF-E; Text file; Text file (File Size); Text file (Media Type) |
| url | https://doi.org/10.1594/PANGAEA.965589 |