Seawater carbonate chemistry and transgenerational physiological and molecular data of Oryzias melastigma
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| Autores principales: | , , , , , , , , |
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| Formato: | Dataset Open Access |
| Lenguaje: | en |
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PANGAEA
2025
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| _version_ | 1867168238503198720 |
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| author | Liu, Tzu-Yen Yan, Jia-Jiun Guh, Ying-Jey Hayasaka, Oki Lin, Li-Yih Hwang, Pung-Pung Wu, Guan-Chung Chung, Ming-Tsung Tseng, Yung-Che |
| author_facet | Liu, Tzu-Yen Yan, Jia-Jiun Guh, Ying-Jey Hayasaka, Oki Lin, Li-Yih Hwang, Pung-Pung Wu, Guan-Chung Chung, Ming-Tsung Tseng, Yung-Che |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | To understand the long-term and transgenerational effects of marine fish, we applied a marine model animal, Oryzias melastigma, to a CO2-induced acidified condition (pH 7.6). This study focused on the larvae's physiological acclimation and how they face acidified stress through gene expression changes. Furthermore, we checked the epigenetic modifications, like DNA methylation, to know if there were any parental effects under this stress. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Dryad (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-08-21. |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_984450 |
| institution | PANGAEA |
| language | en |
| publishDate | 2025 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Seawater carbonate chemistry and transgenerational physiological and molecular data of Oryzias melastigma Liu, Tzu-Yen Yan, Jia-Jiun Guh, Ying-Jey Hayasaka, Oki Lin, Li-Yih Hwang, Pung-Pung Wu, Guan-Chung Chung, Ming-Tsung Tseng, Yung-Che Alkalinity, total; Alkalinity, total, standard deviation; Ammonium, excretion; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Body length; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Chordata; Distance; DNA methylation level; Eye, diameter; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Gene expression; Gene expression (incl. proteomics); Gene name; Group; Growth/Morphology; Heart beat, frequency; Height; Laboratory experiment; Laboratory strains; Nekton; Not applicable; OA-ICC; Ocean acidification; Ocean Acidification International Coordination Centre; Oryzias melastigma; Other metabolic rates; Other studied parameter or process; Oxygen consumption rate; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH, NBS scale; pH, standard deviation; pH, total scale; Protein name; Respiration; Respiration rate/ammonia excretion; Salinity; Salinity, standard deviation; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Stage; Temperature, water; Temperature, water, standard deviation; Type of study; Width To understand the long-term and transgenerational effects of marine fish, we applied a marine model animal, Oryzias melastigma, to a CO2-induced acidified condition (pH 7.6). This study focused on the larvae's physiological acclimation and how they face acidified stress through gene expression changes. Furthermore, we checked the epigenetic modifications, like DNA methylation, to know if there were any parental effects under this stress. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Dryad (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-08-21. |
| title | Seawater carbonate chemistry and transgenerational physiological and molecular data of Oryzias melastigma |
| topic | Alkalinity, total; Alkalinity, total, standard deviation; Ammonium, excretion; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Body length; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Chordata; Distance; DNA methylation level; Eye, diameter; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Gene expression; Gene expression (incl. proteomics); Gene name; Group; Growth/Morphology; Heart beat, frequency; Height; Laboratory experiment; Laboratory strains; Nekton; Not applicable; OA-ICC; Ocean acidification; Ocean Acidification International Coordination Centre; Oryzias melastigma; Other metabolic rates; Other studied parameter or process; Oxygen consumption rate; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH, NBS scale; pH, standard deviation; pH, total scale; Protein name; Respiration; Respiration rate/ammonia excretion; Salinity; Salinity, standard deviation; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Stage; Temperature, water; Temperature, water, standard deviation; Type of study; Width |
| url | https://doi.org/10.1594/PANGAEA.984450 |