Seawater carbonate chemistry from a climate change trial investigating the nasal microbiota of Atlantic cod (Gadus morhua)
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| Format: | Dataset Open Access |
| Langue: | en |
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PANGAEA
2026
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| _version_ | 1867170142271569920 |
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| author | Cohen-Rengifo, Mishal Noel, Cyril Ytteborg, Elisabeth Bégout, Marie-Laure Lazado, Carlo C Le Blay, Gwenaelle Hervio-Heath, Dominique |
| author_facet | Cohen-Rengifo, Mishal Noel, Cyril Ytteborg, Elisabeth Bégout, Marie-Laure Lazado, Carlo C Le Blay, Gwenaelle Hervio-Heath, Dominique |
| collection | Datos científicos de ciencias marinas y ambientales |
| contents | This study provides the first comprehensive analysis of the nasal microbiota (NM) in two marine fish species, the European sea bass and the Atlantic cod. Given its direct environmental exposure, fish NM is likely influenced by sea water fluctuations. We analysed the community structure, specificity regarding seawater, and interindividual variability of 32–38 fish reared under ambient conditions. Additionally, we conducted an experiment to investigate the influence of acidification and a simplified heatwave on cod NM (three fish per replicate). This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-02-09. |
| format | Dataset Open Access |
| id | pangaea_https___doi_org_10_1594_PANGAEA_990501 |
| institution | PANGAEA |
| language | en |
| publishDate | 2026 |
| publisher | PANGAEA |
| record_format | pangaea |
| spellingShingle | Seawater carbonate chemistry from a climate change trial investigating the nasal microbiota of Atlantic cod (Gadus morhua) Cohen-Rengifo, Mishal Noel, Cyril Ytteborg, Elisabeth Bégout, Marie-Laure Lazado, Carlo C Le Blay, Gwenaelle Hervio-Heath, Dominique Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Chordata; Community composition and diversity; Containers and aquaria (20-1000 L or < 1 m**2); Entire community; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Gadus morhua; Identification; Laboratory experiment; Laboratory strains; Nekton; Not applicable; Number of amplicon sequence variants; OA-ICC; Ocean acidification; Ocean Acidification International Coordination Centre; Other studied parameter or process; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH, NBS scale; pH, standard deviation; pH, total scale; Salinity; Sample ID; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Taxon/taxa; Temperature; Temperature, water; Treatment; Type of study This study provides the first comprehensive analysis of the nasal microbiota (NM) in two marine fish species, the European sea bass and the Atlantic cod. Given its direct environmental exposure, fish NM is likely influenced by sea water fluctuations. We analysed the community structure, specificity regarding seawater, and interindividual variability of 32–38 fish reared under ambient conditions. Additionally, we conducted an experiment to investigate the influence of acidification and a simplified heatwave on cod NM (three fish per replicate). This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-02-09. |
| title | Seawater carbonate chemistry from a climate change trial investigating the nasal microbiota of Atlantic cod (Gadus morhua) |
| topic | Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Chordata; Community composition and diversity; Containers and aquaria (20-1000 L or < 1 m**2); Entire community; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Gadus morhua; Identification; Laboratory experiment; Laboratory strains; Nekton; Not applicable; Number of amplicon sequence variants; OA-ICC; Ocean acidification; Ocean Acidification International Coordination Centre; Other studied parameter or process; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH, NBS scale; pH, standard deviation; pH, total scale; Salinity; Sample ID; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Taxon/taxa; Temperature; Temperature, water; Treatment; Type of study |
| url | https://doi.org/10.1594/PANGAEA.990501 |