Endemic Radiation of African Moonfish, (Gill 1863), in the Eastern Atlantic: Mitogenomic Characterization and Phylogenetic Implications of Carangids (Teleostei: Carangiformes).
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| Main Authors: | , , , , , , , , , |
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| Format: | Artículo científico |
| Language: | en |
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Biomolecules
2024
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| author | Ewusi, Emmanuel Ofosu Mireku Lee, Soo Rin Kim, Ah Ran Go, Yunji Htoo, Hsu Chung, Sangdeok Amin, Muhammad Hilman Fu'adil Andriyono, Sapto Kim, Hyun-Woo Kundu, Shantanu |
| author_facet | Ewusi, Emmanuel Ofosu Mireku Lee, Soo Rin Kim, Ah Ran Go, Yunji Htoo, Hsu Chung, Sangdeok Amin, Muhammad Hilman Fu'adil Andriyono, Sapto Kim, Hyun-Woo Kundu, Shantanu Ewusi, Emmanuel Ofosu Mireku Lee, Soo Rin Kim, Ah Ran Go, Yunji Htoo, Hsu Chung, Sangdeok Amin, Muhammad Hilman Fu'adil Andriyono, Sapto Kim, Hyun-Woo Kundu, Shantanu |
| collection | PubMed - marine biology |
| contents | Endemic Radiation of African Moonfish, (Gill 1863), in the Eastern Atlantic: Mitogenomic Characterization and Phylogenetic Implications of Carangids (Teleostei: Carangiformes). Ewusi, Emmanuel Ofosu Mireku Lee, Soo Rin Kim, Ah Ran Go, Yunji Htoo, Hsu Chung, Sangdeok Amin, Muhammad Hilman Fu'adil Andriyono, Sapto Kim, Hyun-Woo Kundu, Shantanu Animals Phylogeny Genome, Mitochondrial Fishes Atlantic Ocean RNA, Transfer DNA, Mitochondrial Evolution, Molecular This study offers an in-depth analysis of the mitochondrial genome of (Gill 1863), a species native to the Eastern Atlantic Ocean. The circular mitochondrial DNA molecule measures 16,541 base pairs and comprises 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA genes, and a control region (CR). The nucleotide composition exhibits a notable adenine-thymine (AT) bias, accounting for 53.13%, which aligns with other species in the Carangidae family. Most PCGs initiate with the ATG codon, with the exception of Cytochrome C oxidase subunit I, which starts with GTG. Analysis of relative synonymous codon usage reveals that leucine and serine are the most prevalent amino acids in the mitochondrial genome of and its congeners ( and ). All tRNAs display the typical cloverleaf structure, though (S1) lacks a dihydrouracil arm. Pairwise comparisons of synonymous and nonsynonymous substitutions for all PCGs yielded values below '1', indicating strong purifying selection. The CR spans 847 bp, representing 5.12% of the mitochondrial genome, and is characterized by high AT content (62.81%). It is situated between (TGG) and (GAA). The CR contains conserved sequence blocks, with CSB-1 being the longest at 22 bp and CSB-D the shortest at 18 bp. Phylogenetic analysis, using Bayesian and Maximum-likelihood trees constructed from concatenated PCGs across 72 species, successfully differentiates from other carangids. This study also explores how ocean currents and gyres might influence lineage diversification and parapatric speciation of species between the Atlantic and Pacific Oceans. These results highlight the importance of the mitochondrial genome in elucidating the structural organization and evolutionary dynamics of and its relatives within marine ecosystems. |
| format | Artículo científico |
| id | pubmed_39456141 |
| institution | PubMed |
| language | en |
| publishDate | 2024 |
| publisher | Biomolecules |
| record_format | pubmed |
| spellingShingle | Endemic Radiation of African Moonfish, (Gill 1863), in the Eastern Atlantic: Mitogenomic Characterization and Phylogenetic Implications of Carangids (Teleostei: Carangiformes). Ewusi, Emmanuel Ofosu Mireku Lee, Soo Rin Kim, Ah Ran Go, Yunji Htoo, Hsu Chung, Sangdeok Amin, Muhammad Hilman Fu'adil Andriyono, Sapto Kim, Hyun-Woo Kundu, Shantanu Animals Phylogeny Genome, Mitochondrial Fishes Atlantic Ocean RNA, Transfer DNA, Mitochondrial Evolution, Molecular Endemic Radiation of African Moonfish, (Gill 1863), in the Eastern Atlantic: Mitogenomic Characterization and Phylogenetic Implications of Carangids (Teleostei: Carangiformes). Ewusi, Emmanuel Ofosu Mireku Lee, Soo Rin Kim, Ah Ran Go, Yunji Htoo, Hsu Chung, Sangdeok Amin, Muhammad Hilman Fu'adil Andriyono, Sapto Kim, Hyun-Woo Kundu, Shantanu Animals Phylogeny Genome, Mitochondrial Fishes Atlantic Ocean RNA, Transfer DNA, Mitochondrial Evolution, Molecular This study offers an in-depth analysis of the mitochondrial genome of (Gill 1863), a species native to the Eastern Atlantic Ocean. The circular mitochondrial DNA molecule measures 16,541 base pairs and comprises 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA genes, and a control region (CR). The nucleotide composition exhibits a notable adenine-thymine (AT) bias, accounting for 53.13%, which aligns with other species in the Carangidae family. Most PCGs initiate with the ATG codon, with the exception of Cytochrome C oxidase subunit I, which starts with GTG. Analysis of relative synonymous codon usage reveals that leucine and serine are the most prevalent amino acids in the mitochondrial genome of and its congeners ( and ). All tRNAs display the typical cloverleaf structure, though (S1) lacks a dihydrouracil arm. Pairwise comparisons of synonymous and nonsynonymous substitutions for all PCGs yielded values below '1', indicating strong purifying selection. The CR spans 847 bp, representing 5.12% of the mitochondrial genome, and is characterized by high AT content (62.81%). It is situated between (TGG) and (GAA). The CR contains conserved sequence blocks, with CSB-1 being the longest at 22 bp and CSB-D the shortest at 18 bp. Phylogenetic analysis, using Bayesian and Maximum-likelihood trees constructed from concatenated PCGs across 72 species, successfully differentiates from other carangids. This study also explores how ocean currents and gyres might influence lineage diversification and parapatric speciation of species between the Atlantic and Pacific Oceans. These results highlight the importance of the mitochondrial genome in elucidating the structural organization and evolutionary dynamics of and its relatives within marine ecosystems. |
| title | Endemic Radiation of African Moonfish, (Gill 1863), in the Eastern Atlantic: Mitogenomic Characterization and Phylogenetic Implications of Carangids (Teleostei: Carangiformes). |
| topic | Animals Phylogeny Genome, Mitochondrial Fishes Atlantic Ocean RNA, Transfer DNA, Mitochondrial Evolution, Molecular |
| url | https://pubmed.ncbi.nlm.nih.gov/39456141/ |