Genome guided, organ-specific transcriptome assembly of the European flounder (P. flesus) from the Baltic Sea.
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| Natura: | Artículo científico |
| Lingua: | en |
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Scientific data
2024
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| _version_ | 1868266284978798593 |
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| author | Pomianowski, Konrad Kulczykowska, Ewa Burzyński, Artur |
| author_facet | Pomianowski, Konrad Kulczykowska, Ewa Burzyński, Artur Pomianowski, Konrad Kulczykowska, Ewa Burzyński, Artur |
| collection | PubMed - marine biology |
| contents | Genome guided, organ-specific transcriptome assembly of the European flounder (P. flesus) from the Baltic Sea. Pomianowski, Konrad Kulczykowska, Ewa Burzyński, Artur Animals Flounder Transcriptome Genome Female High-Throughput Nucleotide Sequencing Oceans and Seas Although the European flounder is frequently used in research and has economic importance, there is still lack of comprehensive transcriptome data for this species. In the present research we show RNA-Seq data from ten selected organs of P. flesus female inhabiting brackish waters of the Gulf of Gdańsk (southern Baltic Sea). High throughput Next Generation Sequencing technology NovaSeq 6000 was used to generate 500 M sequencing reads. These were mapped against European flounder reference genome and reads extracted from the mapping were assembled producing 61k reliable contigs. Gene ontology (GO) terms were assigned to the majority of annotated contigs/unigenes based on the results of PFAM, PANTHER, UniProt and InterPro protein databases searches. BUSCOs statistics for eukaryota, metazoa, vertebrata and actinopterygii databases showed that the reported transcriptome represents a high level of completeness. The data set can be successfully used as a tool in design of experiments from various research fields including biology, aquaculture and toxicology. |
| format | Artículo científico |
| id | pubmed_39477936 |
| institution | PubMed |
| language | en |
| publishDate | 2024 |
| publisher | Scientific data |
| record_format | pubmed |
| spellingShingle | Genome guided, organ-specific transcriptome assembly of the European flounder (P. flesus) from the Baltic Sea. Pomianowski, Konrad Kulczykowska, Ewa Burzyński, Artur Animals Flounder Transcriptome Genome Female High-Throughput Nucleotide Sequencing Oceans and Seas Genome guided, organ-specific transcriptome assembly of the European flounder (P. flesus) from the Baltic Sea. Pomianowski, Konrad Kulczykowska, Ewa Burzyński, Artur Animals Flounder Transcriptome Genome Female High-Throughput Nucleotide Sequencing Oceans and Seas Although the European flounder is frequently used in research and has economic importance, there is still lack of comprehensive transcriptome data for this species. In the present research we show RNA-Seq data from ten selected organs of P. flesus female inhabiting brackish waters of the Gulf of Gdańsk (southern Baltic Sea). High throughput Next Generation Sequencing technology NovaSeq 6000 was used to generate 500 M sequencing reads. These were mapped against European flounder reference genome and reads extracted from the mapping were assembled producing 61k reliable contigs. Gene ontology (GO) terms were assigned to the majority of annotated contigs/unigenes based on the results of PFAM, PANTHER, UniProt and InterPro protein databases searches. BUSCOs statistics for eukaryota, metazoa, vertebrata and actinopterygii databases showed that the reported transcriptome represents a high level of completeness. The data set can be successfully used as a tool in design of experiments from various research fields including biology, aquaculture and toxicology. |
| title | Genome guided, organ-specific transcriptome assembly of the European flounder (P. flesus) from the Baltic Sea. |
| topic | Animals Flounder Transcriptome Genome Female High-Throughput Nucleotide Sequencing Oceans and Seas |
| url | https://pubmed.ncbi.nlm.nih.gov/39477936/ |