Isolate-anchored comparisons reveal evolutionary and functional differentiation across SAR86 marine bacteria.
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| Formato: | Artículo científico |
| Lenguaje: | en |
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The ISME journal
2024
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| _version_ | 1868266282459070466 |
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| author | Ramfelt, Oscar Freel, Kelle C Tucker, Sarah J Nigro, Olivia D Rappé, Michael S |
| author_facet | Ramfelt, Oscar Freel, Kelle C Tucker, Sarah J Nigro, Olivia D Rappé, Michael S Ramfelt, Oscar Freel, Kelle C Tucker, Sarah J Nigro, Olivia D Rappé, Michael S |
| collection | PubMed - marine biology |
| contents | Isolate-anchored comparisons reveal evolutionary and functional differentiation across SAR86 marine bacteria. Ramfelt, Oscar Freel, Kelle C Tucker, Sarah J Nigro, Olivia D Rappé, Michael S Phylogeny Genome, Bacterial Seawater Gammaproteobacteria Aquatic Organisms SAR86 is one of the most abundant groups of bacteria in the global surface ocean. However, since its discovery over 30 years ago, it has remained recalcitrant to isolation and many details regarding this group are still unknown. Here, we report the cellular characteristics from the first SAR86 isolate brought into culture, Magnimaribacter mokuoloeensis strain HIMB1674, and use its closed genome in concert with over 700 environmental genomes to assess the phylogenomic and functional characteristics of this order-level lineage of marine Gammaproteobacteria. The SAR86 order Magnimaribacterales invests significant genomic resources into the capacity for $\beta$-oxidation, which is present in most genomes with high gene copy numbers. This cyclical set of reactions appears to be fed by components of cell membranes that include lipids such as phosphatidylcholine, phosphatidylethanolamine, glycolipids, and sulfolipids. In addition to the widespread capacity to degrade the side chain of steroidal compounds via $\beta$-oxidation, several SAR86 sublineages also appear able to fully degrade the steroid polycyclic ring structure as well as other aromatic, polycyclic, and heterocyclic molecules. Read recruitment from publicly available metagenomes reveals that the Magnimaribacterales compose up to 6% of the global surface ocean microbial community. Only a subset of genera drives these high relative abundances, with some more globally dominant and others restricted to specific oceanic regions. This study provides an unprecedented foundation through which to understand this highly abundant yet poorly understood lineage of marine bacteria and charts a path to bring more representatives of this order into laboratory culture. |
| format | Artículo científico |
| id | pubmed_39520498 |
| institution | PubMed |
| language | en |
| publishDate | 2024 |
| publisher | The ISME journal |
| record_format | pubmed |
| spellingShingle | Isolate-anchored comparisons reveal evolutionary and functional differentiation across SAR86 marine bacteria. Ramfelt, Oscar Freel, Kelle C Tucker, Sarah J Nigro, Olivia D Rappé, Michael S Phylogeny Genome, Bacterial Seawater Gammaproteobacteria Aquatic Organisms Isolate-anchored comparisons reveal evolutionary and functional differentiation across SAR86 marine bacteria. Ramfelt, Oscar Freel, Kelle C Tucker, Sarah J Nigro, Olivia D Rappé, Michael S Phylogeny Genome, Bacterial Seawater Gammaproteobacteria Aquatic Organisms SAR86 is one of the most abundant groups of bacteria in the global surface ocean. However, since its discovery over 30 years ago, it has remained recalcitrant to isolation and many details regarding this group are still unknown. Here, we report the cellular characteristics from the first SAR86 isolate brought into culture, Magnimaribacter mokuoloeensis strain HIMB1674, and use its closed genome in concert with over 700 environmental genomes to assess the phylogenomic and functional characteristics of this order-level lineage of marine Gammaproteobacteria. The SAR86 order Magnimaribacterales invests significant genomic resources into the capacity for $\beta$-oxidation, which is present in most genomes with high gene copy numbers. This cyclical set of reactions appears to be fed by components of cell membranes that include lipids such as phosphatidylcholine, phosphatidylethanolamine, glycolipids, and sulfolipids. In addition to the widespread capacity to degrade the side chain of steroidal compounds via $\beta$-oxidation, several SAR86 sublineages also appear able to fully degrade the steroid polycyclic ring structure as well as other aromatic, polycyclic, and heterocyclic molecules. Read recruitment from publicly available metagenomes reveals that the Magnimaribacterales compose up to 6% of the global surface ocean microbial community. Only a subset of genera drives these high relative abundances, with some more globally dominant and others restricted to specific oceanic regions. This study provides an unprecedented foundation through which to understand this highly abundant yet poorly understood lineage of marine bacteria and charts a path to bring more representatives of this order into laboratory culture. |
| title | Isolate-anchored comparisons reveal evolutionary and functional differentiation across SAR86 marine bacteria. |
| topic | Phylogeny Genome, Bacterial Seawater Gammaproteobacteria Aquatic Organisms |
| url | https://pubmed.ncbi.nlm.nih.gov/39520498/ |