Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems.
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| Formato: | Artículo científico |
| Lenguaje: | en |
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Cell
2024
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| author | Denoeud, France Godfroy, Olivier Cruaud, Corinne Heesch, Svenja Nehr, Zofia Tadrent, Nachida Couloux, Arnaud Brillet-Guéguen, Loraine Delage, Ludovic Mckeown, Dean Motomura, Taizo Sussfeld, Duncan Fan, Xiao Mazéas, Lisa Terrapon, Nicolas Barrera-Redondo, Josué Petroll, Romy Reynes, Lauric Choi, Seok-Wan Jo, Jihoon Uthanumallian, Kavitha Bogaert, Kenny Duc, Céline Ratchinski, Pélagie Lipinska, Agnieszka Noel, Benjamin Murphy, Eleanor A Lohr, Martin Khatei, Ananya Hamon-Giraud, Pauline Vieira, Christophe Avia, Komlan Akerfors, Svea Sanja Akita, Shingo Badis, Yacine Barbeyron, Tristan Belcour, Arnaud Berrabah, Wahiba Blanquart, Samuel Bouguerba-Collin, Ahlem Bringloe, Trevor Cattolico, Rose Ann Cormier, Alexandre Cruz de Carvalho, Helena Dallet, Romain De Clerck, Olivier Debit, Ahmed Denis, Erwan Destombe, Christophe Dinatale, Erica Dittami, Simon Drula, Elodie Faugeron, Sylvain Got, Jeanne Graf, Louis Groisillier, Agnès Guillemin, Marie-Laure Harms, Lars Hatchett, William John Henrissat, Bernard Hoarau, Galice Jollivet, Chloé Jueterbock, Alexander Kayal, Ehsan Knoll, Andrew H Kogame, Kazuhiro Le Bars, Arthur Leblanc, Catherine Le Gall, Line Ley, Ronja Liu, Xi LoDuca, Steven T Lopez, Pascal Jean Lopez, Philippe Manirakiza, Eric Massau, Karine Mauger, Stéphane Mest, Laetitia Michel, Gurvan Monteiro, Catia Nagasato, Chikako Nègre, Delphine Pelletier, Eric Phillips, Naomi Potin, Philippe Rensing, Stefan A Rousselot, Ellyn Rousvoal, Sylvie Schroeder, Declan Scornet, Delphine Siegel, Anne Tirichine, Leila Tonon, Thierry Valentin, Klaus Verbruggen, Heroen Weinberger, Florian Wheeler, Glen Kawai, Hiroshi Peters, Akira F Yoon, Hwan Su Hervé, Cécile Ye, Naihao Bapteste, Eric Valero, Myriam Markov, Gabriel V Corre, Erwan Coelho, Susana M Wincker, Patrick Aury, Jean-Marc Cock, J Mark |
| author_facet | Denoeud, France Godfroy, Olivier Cruaud, Corinne Heesch, Svenja Nehr, Zofia Tadrent, Nachida Couloux, Arnaud Brillet-Guéguen, Loraine Delage, Ludovic Mckeown, Dean Motomura, Taizo Sussfeld, Duncan Fan, Xiao Mazéas, Lisa Terrapon, Nicolas Barrera-Redondo, Josué Petroll, Romy Reynes, Lauric Choi, Seok-Wan Jo, Jihoon Uthanumallian, Kavitha Bogaert, Kenny Duc, Céline Ratchinski, Pélagie Lipinska, Agnieszka Noel, Benjamin Murphy, Eleanor A Lohr, Martin Khatei, Ananya Hamon-Giraud, Pauline Vieira, Christophe Avia, Komlan Akerfors, Svea Sanja Akita, Shingo Badis, Yacine Barbeyron, Tristan Belcour, Arnaud Berrabah, Wahiba Blanquart, Samuel Bouguerba-Collin, Ahlem Bringloe, Trevor Cattolico, Rose Ann Cormier, Alexandre Cruz de Carvalho, Helena Dallet, Romain De Clerck, Olivier Debit, Ahmed Denis, Erwan Destombe, Christophe Dinatale, Erica Dittami, Simon Drula, Elodie Faugeron, Sylvain Got, Jeanne Graf, Louis Groisillier, Agnès Guillemin, Marie-Laure Harms, Lars Hatchett, William John Henrissat, Bernard Hoarau, Galice Jollivet, Chloé Jueterbock, Alexander Kayal, Ehsan Knoll, Andrew H Kogame, Kazuhiro Le Bars, Arthur Leblanc, Catherine Le Gall, Line Ley, Ronja Liu, Xi LoDuca, Steven T Lopez, Pascal Jean Lopez, Philippe Manirakiza, Eric Massau, Karine Mauger, Stéphane Mest, Laetitia Michel, Gurvan Monteiro, Catia Nagasato, Chikako Nègre, Delphine Pelletier, Eric Phillips, Naomi Potin, Philippe Rensing, Stefan A Rousselot, Ellyn Rousvoal, Sylvie Schroeder, Declan Scornet, Delphine Siegel, Anne Tirichine, Leila Tonon, Thierry Valentin, Klaus Verbruggen, Heroen Weinberger, Florian Wheeler, Glen Kawai, Hiroshi Peters, Akira F Yoon, Hwan Su Hervé, Cécile Ye, Naihao Bapteste, Eric Valero, Myriam Markov, Gabriel V Corre, Erwan Coelho, Susana M Wincker, Patrick Aury, Jean-Marc Cock, J Mark Denoeud, France Godfroy, Olivier Cruaud, Corinne Heesch, Svenja Nehr, Zofia Tadrent, Nachida Couloux, Arnaud Brillet-Guéguen, Loraine Delage, Ludovic Mckeown, Dean Motomura, Taizo Sussfeld, Duncan Fan, Xiao Mazéas, Lisa Terrapon, Nicolas Barrera-Redondo, Josué Petroll, Romy Reynes, Lauric Choi, Seok-Wan Jo, Jihoon Uthanumallian, Kavitha Bogaert, Kenny Duc, Céline Ratchinski, Pélagie Lipinska, Agnieszka Noel, Benjamin Murphy, Eleanor A Lohr, Martin Khatei, Ananya Hamon-Giraud, Pauline Vieira, Christophe Avia, Komlan Akerfors, Svea Sanja Akita, Shingo Badis, Yacine Barbeyron, Tristan Belcour, Arnaud Berrabah, Wahiba Blanquart, Samuel Bouguerba-Collin, Ahlem Bringloe, Trevor Cattolico, Rose Ann Cormier, Alexandre Cruz de Carvalho, Helena Dallet, Romain De Clerck, Olivier Debit, Ahmed Denis, Erwan Destombe, Christophe Dinatale, Erica Dittami, Simon Drula, Elodie Faugeron, Sylvain Got, Jeanne Graf, Louis Groisillier, Agnès Guillemin, Marie-Laure Harms, Lars Hatchett, William John Henrissat, Bernard Hoarau, Galice Jollivet, Chloé Jueterbock, Alexander Kayal, Ehsan Knoll, Andrew H Kogame, Kazuhiro Le Bars, Arthur Leblanc, Catherine Le Gall, Line Ley, Ronja Liu, Xi LoDuca, Steven T Lopez, Pascal Jean Lopez, Philippe Manirakiza, Eric Massau, Karine Mauger, Stéphane Mest, Laetitia Michel, Gurvan Monteiro, Catia Nagasato, Chikako Nègre, Delphine Pelletier, Eric Phillips, Naomi Potin, Philippe Rensing, Stefan A Rousselot, Ellyn Rousvoal, Sylvie Schroeder, Declan Scornet, Delphine Siegel, Anne Tirichine, Leila Tonon, Thierry Valentin, Klaus Verbruggen, Heroen Weinberger, Florian Wheeler, Glen Kawai, Hiroshi Peters, Akira F Yoon, Hwan Su Hervé, Cécile Ye, Naihao Bapteste, Eric Valero, Myriam Markov, Gabriel V Corre, Erwan Coelho, Susana M Wincker, Patrick Aury, Jean-Marc Cock, J Mark |
| collection | PubMed - marine biology |
| contents | Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. Denoeud, France Godfroy, Olivier Cruaud, Corinne Heesch, Svenja Nehr, Zofia Tadrent, Nachida Couloux, Arnaud Brillet-Guéguen, Loraine Delage, Ludovic Mckeown, Dean Motomura, Taizo Sussfeld, Duncan Fan, Xiao Mazéas, Lisa Terrapon, Nicolas Barrera-Redondo, Josué Petroll, Romy Reynes, Lauric Choi, Seok-Wan Jo, Jihoon Uthanumallian, Kavitha Bogaert, Kenny Duc, Céline Ratchinski, Pélagie Lipinska, Agnieszka Noel, Benjamin Murphy, Eleanor A Lohr, Martin Khatei, Ananya Hamon-Giraud, Pauline Vieira, Christophe Avia, Komlan Akerfors, Svea Sanja Akita, Shingo Badis, Yacine Barbeyron, Tristan Belcour, Arnaud Berrabah, Wahiba Blanquart, Samuel Bouguerba-Collin, Ahlem Bringloe, Trevor Cattolico, Rose Ann Cormier, Alexandre Cruz de Carvalho, Helena Dallet, Romain De Clerck, Olivier Debit, Ahmed Denis, Erwan Destombe, Christophe Dinatale, Erica Dittami, Simon Drula, Elodie Faugeron, Sylvain Got, Jeanne Graf, Louis Groisillier, Agnès Guillemin, Marie-Laure Harms, Lars Hatchett, William John Henrissat, Bernard Hoarau, Galice Jollivet, Chloé Jueterbock, Alexander Kayal, Ehsan Knoll, Andrew H Kogame, Kazuhiro Le Bars, Arthur Leblanc, Catherine Le Gall, Line Ley, Ronja Liu, Xi LoDuca, Steven T Lopez, Pascal Jean Lopez, Philippe Manirakiza, Eric Massau, Karine Mauger, Stéphane Mest, Laetitia Michel, Gurvan Monteiro, Catia Nagasato, Chikako Nègre, Delphine Pelletier, Eric Phillips, Naomi Potin, Philippe Rensing, Stefan A Rousselot, Ellyn Rousvoal, Sylvie Schroeder, Declan Scornet, Delphine Siegel, Anne Tirichine, Leila Tonon, Thierry Valentin, Klaus Verbruggen, Heroen Weinberger, Florian Wheeler, Glen Kawai, Hiroshi Peters, Akira F Yoon, Hwan Su Hervé, Cécile Ye, Naihao Bapteste, Eric Valero, Myriam Markov, Gabriel V Corre, Erwan Coelho, Susana M Wincker, Patrick Aury, Jean-Marc Cock, J Mark Phaeophyceae Ecosystem Phylogeny Genomics Evolution, Molecular Gene Transfer, Horizontal Genome Brown seaweeds are keystone species of coastal ecosystems, often forming extensive underwater forests, and are under considerable threat from climate change. In this study, analysis of multiple genomes has provided insights across the entire evolutionary history of this lineage, from initial emergence, through later diversification of the brown algal orders, down to microevolutionary events at the genus level. Emergence of the brown algal lineage was associated with a marked gain of new orthologous gene families, enhanced protein domain rearrangement, increased horizontal gene transfer events, and the acquisition of novel signaling molecules and key metabolic pathways, the latter notably related to biosynthesis of the alginate-based extracellular matrix, and halogen and phlorotannin biosynthesis. We show that brown algal genome diversification is tightly linked to phenotypic divergence, including changes in life cycle strategy and zoid flagellar structure. The study also showed that integration of large viral genomes has had a significant impact on brown algal genome content throughout the emergence of the lineage. |
| format | Artículo científico |
| id | pubmed_39571576 |
| institution | PubMed |
| language | en |
| publishDate | 2024 |
| publisher | Cell |
| record_format | pubmed |
| spellingShingle | Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. Denoeud, France Godfroy, Olivier Cruaud, Corinne Heesch, Svenja Nehr, Zofia Tadrent, Nachida Couloux, Arnaud Brillet-Guéguen, Loraine Delage, Ludovic Mckeown, Dean Motomura, Taizo Sussfeld, Duncan Fan, Xiao Mazéas, Lisa Terrapon, Nicolas Barrera-Redondo, Josué Petroll, Romy Reynes, Lauric Choi, Seok-Wan Jo, Jihoon Uthanumallian, Kavitha Bogaert, Kenny Duc, Céline Ratchinski, Pélagie Lipinska, Agnieszka Noel, Benjamin Murphy, Eleanor A Lohr, Martin Khatei, Ananya Hamon-Giraud, Pauline Vieira, Christophe Avia, Komlan Akerfors, Svea Sanja Akita, Shingo Badis, Yacine Barbeyron, Tristan Belcour, Arnaud Berrabah, Wahiba Blanquart, Samuel Bouguerba-Collin, Ahlem Bringloe, Trevor Cattolico, Rose Ann Cormier, Alexandre Cruz de Carvalho, Helena Dallet, Romain De Clerck, Olivier Debit, Ahmed Denis, Erwan Destombe, Christophe Dinatale, Erica Dittami, Simon Drula, Elodie Faugeron, Sylvain Got, Jeanne Graf, Louis Groisillier, Agnès Guillemin, Marie-Laure Harms, Lars Hatchett, William John Henrissat, Bernard Hoarau, Galice Jollivet, Chloé Jueterbock, Alexander Kayal, Ehsan Knoll, Andrew H Kogame, Kazuhiro Le Bars, Arthur Leblanc, Catherine Le Gall, Line Ley, Ronja Liu, Xi LoDuca, Steven T Lopez, Pascal Jean Lopez, Philippe Manirakiza, Eric Massau, Karine Mauger, Stéphane Mest, Laetitia Michel, Gurvan Monteiro, Catia Nagasato, Chikako Nègre, Delphine Pelletier, Eric Phillips, Naomi Potin, Philippe Rensing, Stefan A Rousselot, Ellyn Rousvoal, Sylvie Schroeder, Declan Scornet, Delphine Siegel, Anne Tirichine, Leila Tonon, Thierry Valentin, Klaus Verbruggen, Heroen Weinberger, Florian Wheeler, Glen Kawai, Hiroshi Peters, Akira F Yoon, Hwan Su Hervé, Cécile Ye, Naihao Bapteste, Eric Valero, Myriam Markov, Gabriel V Corre, Erwan Coelho, Susana M Wincker, Patrick Aury, Jean-Marc Cock, J Mark Phaeophyceae Ecosystem Phylogeny Genomics Evolution, Molecular Gene Transfer, Horizontal Genome Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. Denoeud, France Godfroy, Olivier Cruaud, Corinne Heesch, Svenja Nehr, Zofia Tadrent, Nachida Couloux, Arnaud Brillet-Guéguen, Loraine Delage, Ludovic Mckeown, Dean Motomura, Taizo Sussfeld, Duncan Fan, Xiao Mazéas, Lisa Terrapon, Nicolas Barrera-Redondo, Josué Petroll, Romy Reynes, Lauric Choi, Seok-Wan Jo, Jihoon Uthanumallian, Kavitha Bogaert, Kenny Duc, Céline Ratchinski, Pélagie Lipinska, Agnieszka Noel, Benjamin Murphy, Eleanor A Lohr, Martin Khatei, Ananya Hamon-Giraud, Pauline Vieira, Christophe Avia, Komlan Akerfors, Svea Sanja Akita, Shingo Badis, Yacine Barbeyron, Tristan Belcour, Arnaud Berrabah, Wahiba Blanquart, Samuel Bouguerba-Collin, Ahlem Bringloe, Trevor Cattolico, Rose Ann Cormier, Alexandre Cruz de Carvalho, Helena Dallet, Romain De Clerck, Olivier Debit, Ahmed Denis, Erwan Destombe, Christophe Dinatale, Erica Dittami, Simon Drula, Elodie Faugeron, Sylvain Got, Jeanne Graf, Louis Groisillier, Agnès Guillemin, Marie-Laure Harms, Lars Hatchett, William John Henrissat, Bernard Hoarau, Galice Jollivet, Chloé Jueterbock, Alexander Kayal, Ehsan Knoll, Andrew H Kogame, Kazuhiro Le Bars, Arthur Leblanc, Catherine Le Gall, Line Ley, Ronja Liu, Xi LoDuca, Steven T Lopez, Pascal Jean Lopez, Philippe Manirakiza, Eric Massau, Karine Mauger, Stéphane Mest, Laetitia Michel, Gurvan Monteiro, Catia Nagasato, Chikako Nègre, Delphine Pelletier, Eric Phillips, Naomi Potin, Philippe Rensing, Stefan A Rousselot, Ellyn Rousvoal, Sylvie Schroeder, Declan Scornet, Delphine Siegel, Anne Tirichine, Leila Tonon, Thierry Valentin, Klaus Verbruggen, Heroen Weinberger, Florian Wheeler, Glen Kawai, Hiroshi Peters, Akira F Yoon, Hwan Su Hervé, Cécile Ye, Naihao Bapteste, Eric Valero, Myriam Markov, Gabriel V Corre, Erwan Coelho, Susana M Wincker, Patrick Aury, Jean-Marc Cock, J Mark Phaeophyceae Ecosystem Phylogeny Genomics Evolution, Molecular Gene Transfer, Horizontal Genome Brown seaweeds are keystone species of coastal ecosystems, often forming extensive underwater forests, and are under considerable threat from climate change. In this study, analysis of multiple genomes has provided insights across the entire evolutionary history of this lineage, from initial emergence, through later diversification of the brown algal orders, down to microevolutionary events at the genus level. Emergence of the brown algal lineage was associated with a marked gain of new orthologous gene families, enhanced protein domain rearrangement, increased horizontal gene transfer events, and the acquisition of novel signaling molecules and key metabolic pathways, the latter notably related to biosynthesis of the alginate-based extracellular matrix, and halogen and phlorotannin biosynthesis. We show that brown algal genome diversification is tightly linked to phenotypic divergence, including changes in life cycle strategy and zoid flagellar structure. The study also showed that integration of large viral genomes has had a significant impact on brown algal genome content throughout the emergence of the lineage. |
| title | Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. |
| topic | Phaeophyceae Ecosystem Phylogeny Genomics Evolution, Molecular Gene Transfer, Horizontal Genome |
| url | https://pubmed.ncbi.nlm.nih.gov/39571576/ |