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Main Authors: Guri, Gledis, Ray, Jessica Louise, Shelton, Andrew Olaf, Kelly, Ryan P, Præbel, Kim, Andruszkiewicz Allan, Elizabeth, Yoccoz, Nigel, Johansen, Torild, Wangensteen, Owen S, Hanebrekke, Tanja, Westgaard, Jon-Ivar
Format: Artículo científico
Language:en
Published: Ecology and evolution 2024
Online Access:https://pubmed.ncbi.nlm.nih.gov/39669509/
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author Guri, Gledis
Ray, Jessica Louise
Shelton, Andrew Olaf
Kelly, Ryan P
Præbel, Kim
Andruszkiewicz Allan, Elizabeth
Yoccoz, Nigel
Johansen, Torild
Wangensteen, Owen S
Hanebrekke, Tanja
Westgaard, Jon-Ivar
author_facet Guri, Gledis
Ray, Jessica Louise
Shelton, Andrew Olaf
Kelly, Ryan P
Præbel, Kim
Andruszkiewicz Allan, Elizabeth
Yoccoz, Nigel
Johansen, Torild
Wangensteen, Owen S
Hanebrekke, Tanja
Westgaard, Jon-Ivar
Guri, Gledis
Ray, Jessica Louise
Shelton, Andrew Olaf
Kelly, Ryan P
Præbel, Kim
Andruszkiewicz Allan, Elizabeth
Yoccoz, Nigel
Johansen, Torild
Wangensteen, Owen S
Hanebrekke, Tanja
Westgaard, Jon-Ivar
collection PubMed - marine biology
contents Quantifying the Detection Sensitivity and Precision of qPCR and ddPCR Mechanisms for eDNA Samples. Guri, Gledis Ray, Jessica Louise Shelton, Andrew Olaf Kelly, Ryan P Præbel, Kim Andruszkiewicz Allan, Elizabeth Yoccoz, Nigel Johansen, Torild Wangensteen, Owen S Hanebrekke, Tanja Westgaard, Jon-Ivar Environmental DNA (eDNA) detection employing quantitative PCR (qPCR) and droplet digital PCR (ddPCR) offers a non-invasive and efficient approach for monitoring aquatic organisms. Accurate and sensitive quantification of eDNA is crucial for tracking rare and invasive species and understanding the biodiversity abundance and distribution of aquatic organisms. This study compares the sensitivity and quantification precision of qPCR and ddPCR for eDNA surveys through Bayesian inference using latent parameters from both known concentration (standards) and environmental samples across three teleost fish species assays. The results show that ddPCR offers higher sensitivity and quantification precision, particularly at low DNA concentrations (
format Artículo científico
id pubmed_39669509
institution PubMed
language en
publishDate 2024
publisher Ecology and evolution
record_format pubmed
spellingShingle Quantifying the Detection Sensitivity and Precision of qPCR and ddPCR Mechanisms for eDNA Samples.
Guri, Gledis
Ray, Jessica Louise
Shelton, Andrew Olaf
Kelly, Ryan P
Præbel, Kim
Andruszkiewicz Allan, Elizabeth
Yoccoz, Nigel
Johansen, Torild
Wangensteen, Owen S
Hanebrekke, Tanja
Westgaard, Jon-Ivar
Quantifying the Detection Sensitivity and Precision of qPCR and ddPCR Mechanisms for eDNA Samples. Guri, Gledis Ray, Jessica Louise Shelton, Andrew Olaf Kelly, Ryan P Præbel, Kim Andruszkiewicz Allan, Elizabeth Yoccoz, Nigel Johansen, Torild Wangensteen, Owen S Hanebrekke, Tanja Westgaard, Jon-Ivar Environmental DNA (eDNA) detection employing quantitative PCR (qPCR) and droplet digital PCR (ddPCR) offers a non-invasive and efficient approach for monitoring aquatic organisms. Accurate and sensitive quantification of eDNA is crucial for tracking rare and invasive species and understanding the biodiversity abundance and distribution of aquatic organisms. This study compares the sensitivity and quantification precision of qPCR and ddPCR for eDNA surveys through Bayesian inference using latent parameters from both known concentration (standards) and environmental samples across three teleost fish species assays. The results show that ddPCR offers higher sensitivity and quantification precision, particularly at low DNA concentrations (
title Quantifying the Detection Sensitivity and Precision of qPCR and ddPCR Mechanisms for eDNA Samples.
url https://pubmed.ncbi.nlm.nih.gov/39669509/