Breaking free from references: a consensus-based approach for community profiling with long amplicon nanopore data.
Fuente:
PubMed
Enregistré dans:
| Auteurs principaux: | Stock, Willem, Rousseau, Coralie, Dierickx, Glen, D'hondt, Sofie, Amadei Martínez, Luz, Dittami, Simon M, van der Loos, Luna M, De Clerck, Olivier |
|---|---|
| Format: | Artículo científico |
| Langue: | en |
| Publié: |
Briefings in bioinformatics
2024
|
| Sujets: | |
| Accès en ligne: | |
| Tags: |
Ajouter un tag
Pas de tags, Soyez le premier à ajouter un tag!
|
Documents similaires
CLAE: A High-Fidelity Nanopore Sequencing Strategy for Read-Level Viral Variant Detection and Environmental RNA Virus Discovery.
par: Yu, Hannah, et autres
Publié: (2025)
par: Yu, Hannah, et autres
Publié: (2025)
Assembly of Mitochondrial Genomes Using Nanopore Long-Read Technology in Three Sea Chubs (Teleostei: Kyphosidae).
par: Baeza, J Antonio, et autres
Publié: (2025)
par: Baeza, J Antonio, et autres
Publié: (2025)
A Step-by-Step Guide to Sequencing and Assembly of Complete Bacterial Genomes Using the Oxford Nanopore MinION.
par: Kumar, Anil, et autres
Publié: (2025)
par: Kumar, Anil, et autres
Publié: (2025)
Nano3P-seq: charting the coding and noncoding transcriptome at single-molecule resolution.
par: Begik, Oguzhan, et autres
Publié: (2025)
par: Begik, Oguzhan, et autres
Publié: (2025)
A high-quality Oxford Nanopore assembly of the hourglass dolphin (Lagenorhynchus cruciger) genome.
par: McGrath, Nick, et autres
Publié: (2025)
par: McGrath, Nick, et autres
Publié: (2025)
High-quality chromosome-level genome of three Meretrix species using Nanopore and Hi-C technologies.
par: Chen, Che-Chun, et autres
Publié: (2025)
par: Chen, Che-Chun, et autres
Publié: (2025)
A Targeted Reference Database for Improved Analysis of Environmental 16S rRNA Oxford Nanopore Sequencing Data.
par: Philip, Melcy, et autres
Publié: (2025)
par: Philip, Melcy, et autres
Publié: (2025)
De novo transcriptome assembly of Acartia tonsa adults using Nanopore long-read sequencing.
par: Mohamed, Florencia, et autres
Publié: (2025)
par: Mohamed, Florencia, et autres
Publié: (2025)
Targeted analysis of metagenomes: divide and conquer.
par: Valmas, Marios I, et autres
Publié: (2025)
par: Valmas, Marios I, et autres
Publié: (2025)
Microbiome characterization of the sea slugs Elysia viridis and Placida dendritica: insights into potential roles in kleptoplasty.
par: Martins, Patrícia, et autres
Publié: (2026)
par: Martins, Patrícia, et autres
Publié: (2026)
Exploring the Ocean's Microbial World: Techniques and Protocols for Microbiome Research.
par: Rangamaran, Vijaya Raghavan, et autres
Publié: (2026)
par: Rangamaran, Vijaya Raghavan, et autres
Publié: (2026)
Bacterial community structure and secondary metabolite insights from halophiles at Oniru Beach, Lagos.
par: Olaleye, Abike Christianah, et autres
Publié: (2025)
par: Olaleye, Abike Christianah, et autres
Publié: (2025)
A Practical Comparison of Short- and Long-Read Metabarcoding Sequencing: Challenges and Solutions for Plastid Read Removal and Microbial Community Exploration of Seaweed Samples.
par: Rousseau, Coralie, et autres
Publié: (2025)
par: Rousseau, Coralie, et autres
Publié: (2025)
Metagenomic analysis of deep-sea bacterial communities in the Makassar and Lombok Straits.
par: Siallagan, Zen Ladestam, et autres
Publié: (2024)
par: Siallagan, Zen Ladestam, et autres
Publié: (2024)
Fusarium enrichment alters the soil microbial community and network structure of Brassica crops.
par: Zhang, Zhi-Feng, et autres
Publié: (2026)
par: Zhang, Zhi-Feng, et autres
Publié: (2026)
Understanding Hepatopancreas-Associated Microbiota in the Supralittoral Tylos ponticus (Crustacea, Isopoda, Oniscidea): Insights from Next-Generation Sequencing Approaches.
par: Davolos, Domenico, et autres
Publié: (2026)
par: Davolos, Domenico, et autres
Publié: (2026)
Monitoring Fish Bacterial Pathogens of Wild Fish Species From the South China Sea by Applying Next-Generation Sequencing on Gill Tissue.
par: Zrihan, Shlomi, et autres
Publié: (2025)
par: Zrihan, Shlomi, et autres
Publié: (2025)
Bacterial and Symbiodiniaceae communities' variation in corals with distinct traits and geographical distribution.
par: Villela, Livia Bonetti, et autres
Publié: (2024)
par: Villela, Livia Bonetti, et autres
Publié: (2024)
Ecological processes shaping highly connected bacterial communities along strong environmental gradients.
par: Wu, Wenxue, et autres
Publié: (2024)
par: Wu, Wenxue, et autres
Publié: (2024)
Sequence decoding and analysis of the first reference mitogenome of globally threatened clown-knife fish, Chitala chitala: witness of codon usage bias and intense purifying selection.
par: Islam, Mohammad Nazrul, et autres
Publié: (2026)
par: Islam, Mohammad Nazrul, et autres
Publié: (2026)
Characterization of prokaryotic plankton community structure in the Southern East China Sea using combined 16S-rDNA and 16S-rRNA.
par: Chang, Yi-Ting, et autres
Publié: (2025)
par: Chang, Yi-Ting, et autres
Publié: (2025)
Temporal Dynamics and Adaptive Mechanisms of Microbial Communities: Divergent Responses and Network Interactions.
par: Sun, Shengjie, et autres
Publié: (2025)
par: Sun, Shengjie, et autres
Publié: (2025)
SMAC: identifying DNA N6-methyladenine (6mA) at the single-molecule level using SMRT CCS data.
par: Li, Haicheng, et autres
Publié: (2025)
par: Li, Haicheng, et autres
Publié: (2025)
Evaluation of Low-Coverage Sequencing Strategies for Whole-Genome Imputation in Pacific Abalone .
par: Fei, Chengxia, et autres
Publié: (2025)
par: Fei, Chengxia, et autres
Publié: (2025)
Optimization of Whole-Genome Resequencing Depth for High-Throughput SNP Genotyping in .
par: Lin, Pengfei, et autres
Publié: (2024)
par: Lin, Pengfei, et autres
Publié: (2024)
Contrasting patterns in diversity and community assembly of bacterioplankton and three size fractions of protists in the South China Sea.
par: Zheng, Xinyi, et autres
Publié: (2025)
par: Zheng, Xinyi, et autres
Publié: (2025)
Ecological insights into circular putative plasmids in Stylissa carteri microbiomes across the Indo-Pacific.
par: Oliveira, Vanessa, et autres
Publié: (2025)
par: Oliveira, Vanessa, et autres
Publié: (2025)
Root Canal Microbiome in Patients Undergoing Antineoplastic Therapy: A Next-generation Sequencing Study.
par: Romeiro, Kaline, et autres
Publié: (2026)
par: Romeiro, Kaline, et autres
Publié: (2026)
Long-read nanopore shotgun metagenomic DNA sequencing for river biodiversity, wildlife, pollution, and environmental health monitoring.
par: Nousias, Orestis, et autres
Publié: (2026)
par: Nousias, Orestis, et autres
Publié: (2026)
Chromosome-level genome assembly of the Suminoe oyster Crassostrea ariakensis in south China.
par: Li, Ao, et autres
Publié: (2024)
par: Li, Ao, et autres
Publié: (2024)
Evaluation of Fish Species Detection in the Northwestern Pacific using eDNA Metabarcoding: A Mock Community Approach.
par: Turanov, Sergei V, et autres
Publié: (2025)
par: Turanov, Sergei V, et autres
Publié: (2025)
Using ChatGPT as a tool for training nonprogrammers to generate genomic sequence analysis code.
par: Delcher, Haley A, et autres
Publié: (2025)
par: Delcher, Haley A, et autres
Publié: (2025)
Kareniaceae in focus: A molecular survey of harmful algal dinoflagellates in the South China Sea.
par: Lv, Yuping, et autres
Publié: (2025)
par: Lv, Yuping, et autres
Publié: (2025)
The Morphology and Small Subunit rDNA Gene Phylogeny of the Novel Goniomonad Genus Ebisugoniomonas and Two Novel Poseidogoniomonas Species.
par: Zavadska, Daryna, et autres
Publié: (2026)
par: Zavadska, Daryna, et autres
Publié: (2026)
Chromosomal-level genome assembly of an allotetraploid oyster.
par: Li, Ao, et autres
Publié: (2025)
par: Li, Ao, et autres
Publié: (2025)
Removal of sequencing adapter contamination improves microbial genome databases.
par: Moeller, Andrew H, et autres
Publié: (2024)
par: Moeller, Andrew H, et autres
Publié: (2024)
On the Identity and Taxonomic Circumscription of the Pfiesteriacean Genera Aduncodinium and Speroidium (Dinophyceae).
par: Reñé, Albert, et autres
Publié: (2025)
par: Reñé, Albert, et autres
Publié: (2025)
Morphological and Molecular Phylogenetic Characterization of Three New Marine Goniomonad Species.
par: Phanprasert, Yasinee, et autres
Publié: (2025)
par: Phanprasert, Yasinee, et autres
Publié: (2025)
Genome guided, organ-specific transcriptome assembly of the European flounder (P. flesus) from the Baltic Sea.
par: Pomianowski, Konrad, et autres
Publié: (2024)
par: Pomianowski, Konrad, et autres
Publié: (2024)
Which is more priority, substrate type or food quality? A case study on a tropical coral reef sea cucumber Stichopus chloronotus revealed by prokaryotic biomarker.
par: Sun, Chunyang, et autres
Publié: (2024)
par: Sun, Chunyang, et autres
Publié: (2024)
Documents similaires
-
CLAE: A High-Fidelity Nanopore Sequencing Strategy for Read-Level Viral Variant Detection and Environmental RNA Virus Discovery.
par: Yu, Hannah, et autres
Publié: (2025) -
Assembly of Mitochondrial Genomes Using Nanopore Long-Read Technology in Three Sea Chubs (Teleostei: Kyphosidae).
par: Baeza, J Antonio, et autres
Publié: (2025) -
A Step-by-Step Guide to Sequencing and Assembly of Complete Bacterial Genomes Using the Oxford Nanopore MinION.
par: Kumar, Anil, et autres
Publié: (2025) -
Nano3P-seq: charting the coding and noncoding transcriptome at single-molecule resolution.
par: Begik, Oguzhan, et autres
Publié: (2025) -
A high-quality Oxford Nanopore assembly of the hourglass dolphin (Lagenorhynchus cruciger) genome.
par: McGrath, Nick, et autres
Publié: (2025)