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| Main Authors: | , , , , , , , , , , |
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| Format: | Artículo científico |
| Language: | en |
| Published: |
Scientific data
2024
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| Subjects: | |
| Online Access: | https://pubmed.ncbi.nlm.nih.gov/39695201/ |
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| _version_ | 1868266265819217921 |
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| author | Liu, Yang Chen, Ting Ma, Bo Yin, Jiayue Ren, Chunhua Jiang, Xiao Wang, Yanhong Pan, Wenjie Huang, Jiasheng Yu, Suzhong Luo, Peng |
| author_facet | Liu, Yang Chen, Ting Ma, Bo Yin, Jiayue Ren, Chunhua Jiang, Xiao Wang, Yanhong Pan, Wenjie Huang, Jiasheng Yu, Suzhong Luo, Peng Liu, Yang Chen, Ting Ma, Bo Yin, Jiayue Ren, Chunhua Jiang, Xiao Wang, Yanhong Pan, Wenjie Huang, Jiasheng Yu, Suzhong Luo, Peng |
| collection | PubMed - marine biology |
| contents | A chromosome-level genome assembly of tropical purple sea urchin Heliocidaris crassispina. Liu, Yang Chen, Ting Ma, Bo Yin, Jiayue Ren, Chunhua Jiang, Xiao Wang, Yanhong Pan, Wenjie Huang, Jiasheng Yu, Suzhong Luo, Peng Animals Chromosomes Genome Anthocidaris RNA, Untranslated Molecular Sequence Annotation Heliocidaris crassispina is a tropical sea urchin that holds both ecological and economic value and serves as an ideal experimental animal. This study first employed a combination of PacBio HiFi and Hi-C sequencing data to present a high-quality, chromosome-level assembly of H. crassispina genome. This assembled genome spanned 709.77 Mb, with a contig N50 length of 4.98 Mb and a scaffold N50 length of 33.23 Mb. The assembly was anchored on 21 pseudo-chromosomes, covering 98.32% of the genome. A total of 18,665 protein-coding genes were identified, and BUSCO analysis revealed a completeness score of 97.1%. Additionally, non-coding RNAs (ncRNAs) were annotated, including miRNAs, rRNAs, tRNAs and snRNAs, providing a more complete functional understanding of the genome. The high-quality reference genome will enrich the current echinoderm genomic resources and provide a solid foundation for future studies on H. crassispina, including resource surveys, genomic breeding, and marine ranch management. |
| format | Artículo científico |
| id | pubmed_39695201 |
| institution | PubMed |
| language | en |
| publishDate | 2024 |
| publisher | Scientific data |
| record_format | pubmed |
| spellingShingle | A chromosome-level genome assembly of tropical purple sea urchin Heliocidaris crassispina. Liu, Yang Chen, Ting Ma, Bo Yin, Jiayue Ren, Chunhua Jiang, Xiao Wang, Yanhong Pan, Wenjie Huang, Jiasheng Yu, Suzhong Luo, Peng Animals Chromosomes Genome Anthocidaris RNA, Untranslated Molecular Sequence Annotation A chromosome-level genome assembly of tropical purple sea urchin Heliocidaris crassispina. Liu, Yang Chen, Ting Ma, Bo Yin, Jiayue Ren, Chunhua Jiang, Xiao Wang, Yanhong Pan, Wenjie Huang, Jiasheng Yu, Suzhong Luo, Peng Animals Chromosomes Genome Anthocidaris RNA, Untranslated Molecular Sequence Annotation Heliocidaris crassispina is a tropical sea urchin that holds both ecological and economic value and serves as an ideal experimental animal. This study first employed a combination of PacBio HiFi and Hi-C sequencing data to present a high-quality, chromosome-level assembly of H. crassispina genome. This assembled genome spanned 709.77 Mb, with a contig N50 length of 4.98 Mb and a scaffold N50 length of 33.23 Mb. The assembly was anchored on 21 pseudo-chromosomes, covering 98.32% of the genome. A total of 18,665 protein-coding genes were identified, and BUSCO analysis revealed a completeness score of 97.1%. Additionally, non-coding RNAs (ncRNAs) were annotated, including miRNAs, rRNAs, tRNAs and snRNAs, providing a more complete functional understanding of the genome. The high-quality reference genome will enrich the current echinoderm genomic resources and provide a solid foundation for future studies on H. crassispina, including resource surveys, genomic breeding, and marine ranch management. |
| title | A chromosome-level genome assembly of tropical purple sea urchin Heliocidaris crassispina. |
| topic | Animals Chromosomes Genome Anthocidaris RNA, Untranslated Molecular Sequence Annotation |
| url | https://pubmed.ncbi.nlm.nih.gov/39695201/ |