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| Main Authors: | , , , , |
|---|---|
| Format: | Artículo científico |
| Language: | en |
| Published: |
GigaByte (Hong Kong, China)
2024
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| Online Access: | https://pubmed.ncbi.nlm.nih.gov/39791000/ |
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| _version_ | 1868266258138398721 |
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| author | Gairin, Emma Miura, Saori Takamiyagi, Hiroki Herrera, Marcela Laudet, Vincent |
| author_facet | Gairin, Emma Miura, Saori Takamiyagi, Hiroki Herrera, Marcela Laudet, Vincent Gairin, Emma Miura, Saori Takamiyagi, Hiroki Herrera, Marcela Laudet, Vincent |
| collection | PubMed - marine biology |
| contents | The genome of the sapphire damselfish : a new resource to support further investigation of the evolution of Pomacentrids. Gairin, Emma Miura, Saori Takamiyagi, Hiroki Herrera, Marcela Laudet, Vincent The number of high-quality genomes is rapidly increasing across taxa. However, it remains limited for coral reef fish of the Pomacentrid family, with most research focused on anemonefish. Here, we present the first assembly for a Pomacentrid of the genus . Using PacBio long-read sequencing with 94.5× coverage, the genome of the Sapphire Devil, , was assembled and annotated. The final assembly comprises 896 Mb pairs across 91 contigs, with a BUSCO completeness of 97.6%, and 28,173 genes. Comparative analyses with chromosome-scale assemblies of related species identified contig-chromosome correspondences. This genome will be useful as a comparison to study specific adaptations linked to the symbiotic life of closely related anemonefish. Furthermore, is found in most tropical coastal areas of the Indo-West Pacific and could become a model for environmental monitoring. This work will expand coral reef research efforts, highlighting the power of long-read assemblies to retrieve high quality genomes. |
| format | Artículo científico |
| id | pubmed_39791000 |
| institution | PubMed |
| language | en |
| publishDate | 2024 |
| publisher | GigaByte (Hong Kong, China) |
| record_format | pubmed |
| spellingShingle | The genome of the sapphire damselfish : a new resource to support further investigation of the evolution of Pomacentrids. Gairin, Emma Miura, Saori Takamiyagi, Hiroki Herrera, Marcela Laudet, Vincent The genome of the sapphire damselfish : a new resource to support further investigation of the evolution of Pomacentrids. Gairin, Emma Miura, Saori Takamiyagi, Hiroki Herrera, Marcela Laudet, Vincent The number of high-quality genomes is rapidly increasing across taxa. However, it remains limited for coral reef fish of the Pomacentrid family, with most research focused on anemonefish. Here, we present the first assembly for a Pomacentrid of the genus . Using PacBio long-read sequencing with 94.5× coverage, the genome of the Sapphire Devil, , was assembled and annotated. The final assembly comprises 896 Mb pairs across 91 contigs, with a BUSCO completeness of 97.6%, and 28,173 genes. Comparative analyses with chromosome-scale assemblies of related species identified contig-chromosome correspondences. This genome will be useful as a comparison to study specific adaptations linked to the symbiotic life of closely related anemonefish. Furthermore, is found in most tropical coastal areas of the Indo-West Pacific and could become a model for environmental monitoring. This work will expand coral reef research efforts, highlighting the power of long-read assemblies to retrieve high quality genomes. |
| title | The genome of the sapphire damselfish : a new resource to support further investigation of the evolution of Pomacentrids. |
| url | https://pubmed.ncbi.nlm.nih.gov/39791000/ |