Beyond digital twins: the role of foundation models in enhancing the interpretability of multiomics modalities in precision medicine.

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Main Authors: Alsaedi, Sakhaa, Gao, Xin, Gojobori, Takashi
Format: Artículo científico
Language:en
Published: FEBS open bio 2025
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author Alsaedi, Sakhaa
Gao, Xin
Gojobori, Takashi
author_facet Alsaedi, Sakhaa
Gao, Xin
Gojobori, Takashi
Alsaedi, Sakhaa
Gao, Xin
Gojobori, Takashi
collection PubMed - marine biology
contents Beyond digital twins: the role of foundation models in enhancing the interpretability of multiomics modalities in precision medicine. Alsaedi, Sakhaa Gao, Xin Gojobori, Takashi Precision Medicine Humans Machine Learning Genomics Computational Biology Multiomics Medical digital twins (MDTs) are virtual representations of patients that simulate the biological, physiological, and clinical processes of individuals to enable personalized medicine. With the increasing complexity of omics data, particularly multiomics, there is a growing need for advanced computational frameworks to interpret these data effectively. Foundation models (FMs), large-scale machine learning models pretrained on diverse data types, have recently emerged as powerful tools for improving data interpretability and decision-making in precision medicine. This review discusses the integration of FMs into MDT systems, particularly their role in enhancing the interpretability of multiomics data. We examine current challenges, recent advancements, and future opportunities in leveraging FMs for multiomics analysis in MDTs, with a focus on their application in precision medicine.
format Artículo científico
id pubmed_39995150
institution PubMed
language en
publishDate 2025
publisher FEBS open bio
record_format pubmed
spellingShingle Beyond digital twins: the role of foundation models in enhancing the interpretability of multiomics modalities in precision medicine.
Alsaedi, Sakhaa
Gao, Xin
Gojobori, Takashi
Precision Medicine
Humans
Machine Learning
Genomics
Computational Biology
Multiomics
Beyond digital twins: the role of foundation models in enhancing the interpretability of multiomics modalities in precision medicine. Alsaedi, Sakhaa Gao, Xin Gojobori, Takashi Precision Medicine Humans Machine Learning Genomics Computational Biology Multiomics Medical digital twins (MDTs) are virtual representations of patients that simulate the biological, physiological, and clinical processes of individuals to enable personalized medicine. With the increasing complexity of omics data, particularly multiomics, there is a growing need for advanced computational frameworks to interpret these data effectively. Foundation models (FMs), large-scale machine learning models pretrained on diverse data types, have recently emerged as powerful tools for improving data interpretability and decision-making in precision medicine. This review discusses the integration of FMs into MDT systems, particularly their role in enhancing the interpretability of multiomics data. We examine current challenges, recent advancements, and future opportunities in leveraging FMs for multiomics analysis in MDTs, with a focus on their application in precision medicine.
title Beyond digital twins: the role of foundation models in enhancing the interpretability of multiomics modalities in precision medicine.
topic Precision Medicine
Humans
Machine Learning
Genomics
Computational Biology
Multiomics
url https://pubmed.ncbi.nlm.nih.gov/39995150/