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| Autores principales: | , , , , , , , , , |
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| Formato: | Artículo científico |
| Lenguaje: | en |
| Publicado: |
Scientific data
2025
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| Materias: | |
| Acceso en línea: | https://pubmed.ncbi.nlm.nih.gov/40140403/ |
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| _version_ | 1868266226127470593 |
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| author | Chen, Xiaomei Han, Wentao Chang, Xinyao Tang, Caiyin Chen, Kai Bao, Lisui Zhang, Lingling Hu, Jingjie Wang, Shi Bao, Zhenmin |
| author_facet | Chen, Xiaomei Han, Wentao Chang, Xinyao Tang, Caiyin Chen, Kai Bao, Lisui Zhang, Lingling Hu, Jingjie Wang, Shi Bao, Zhenmin Chen, Xiaomei Han, Wentao Chang, Xinyao Tang, Caiyin Chen, Kai Bao, Lisui Zhang, Lingling Hu, Jingjie Wang, Shi Bao, Zhenmin |
| collection | PubMed - marine biology |
| contents | High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829). Chen, Xiaomei Han, Wentao Chang, Xinyao Tang, Caiyin Chen, Kai Bao, Lisui Zhang, Lingling Hu, Jingjie Wang, Shi Bao, Zhenmin Anthozoa Animals Genome Coral Reefs Coral reefs are among the most biodiverse and economically significant ecosystems globally, yet they are increasingly degrading due to global climate change and local human activities. The sun coral Tubastraea coccinea (T. coccinea) an obligate heterotroph lacking symbiotic zooxanthellae, exhibits remarkable tolerance to conditions that cause bleaching and mortality in zooxanthellate species. With its extensive low-latitude distribution across multiple oceans, T. coccinea has become a highly invasive species, adversely impacting native species, degrading local ecosystems, and causing significant socio-economic challenges that demand effective management. Despite substantial research efforts, the molecular biology of T. coccinea remains insufficiently characterized. To address this gap, we generated a draft genome assembly for T. coccinea using PacBio Hi-Fi long-read sequencing. The assembly spans 875.9 Mb with a scaffold N50 of 694.3 kb and demonstrates high completeness, with a BUSCO score of 97.4%. A total of 37,307 protein-coding sequences were identified, 95.2% of which were functionally annotated through comparisons with established protein databases. This reference genome provides a valuable resource for understanding the genetic structure of T. coccinea, advancing research into its adaptive mechanism to environmental changes, and informing conservation and management strategies to mitigate its invasive impact. |
| format | Artículo científico |
| id | pubmed_40140403 |
| institution | PubMed |
| language | en |
| publishDate | 2025 |
| publisher | Scientific data |
| record_format | pubmed |
| spellingShingle | High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829). Chen, Xiaomei Han, Wentao Chang, Xinyao Tang, Caiyin Chen, Kai Bao, Lisui Zhang, Lingling Hu, Jingjie Wang, Shi Bao, Zhenmin Anthozoa Animals Genome Coral Reefs High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829). Chen, Xiaomei Han, Wentao Chang, Xinyao Tang, Caiyin Chen, Kai Bao, Lisui Zhang, Lingling Hu, Jingjie Wang, Shi Bao, Zhenmin Anthozoa Animals Genome Coral Reefs Coral reefs are among the most biodiverse and economically significant ecosystems globally, yet they are increasingly degrading due to global climate change and local human activities. The sun coral Tubastraea coccinea (T. coccinea) an obligate heterotroph lacking symbiotic zooxanthellae, exhibits remarkable tolerance to conditions that cause bleaching and mortality in zooxanthellate species. With its extensive low-latitude distribution across multiple oceans, T. coccinea has become a highly invasive species, adversely impacting native species, degrading local ecosystems, and causing significant socio-economic challenges that demand effective management. Despite substantial research efforts, the molecular biology of T. coccinea remains insufficiently characterized. To address this gap, we generated a draft genome assembly for T. coccinea using PacBio Hi-Fi long-read sequencing. The assembly spans 875.9 Mb with a scaffold N50 of 694.3 kb and demonstrates high completeness, with a BUSCO score of 97.4%. A total of 37,307 protein-coding sequences were identified, 95.2% of which were functionally annotated through comparisons with established protein databases. This reference genome provides a valuable resource for understanding the genetic structure of T. coccinea, advancing research into its adaptive mechanism to environmental changes, and informing conservation and management strategies to mitigate its invasive impact. |
| title | High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829). |
| topic | Anthozoa Animals Genome Coral Reefs |
| url | https://pubmed.ncbi.nlm.nih.gov/40140403/ |