Adaptive adjustment of profile HMM significance thresholds improves functional and metabolic insights into microbial genomes.

Fuente: PubMed

Guardado en:

Detalles Bibliográficos
Autores principales:	Kananen, Kathryn, Veseli, Iva, Quiles Pérez, Christian J, Miller, Samuel E, Eren, A Murat, Bradley, Patrick H
Formato:	Artículo científico
Lenguaje:	en
Publicado:	Bioinformatics advances 2025
Acceso en línea:	Acceder al recurso
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

Ejemplares similares

Quantitative insights into the efficacy of genome-resolved surveys of microbial communities through ribosomal protein phylogeography and EcoPhylo.
por: Schechter, Matthew S, et al.
Publicado: (2025)

Gifting future scientists the past through well-preserved specimens of modern microbial ecosystems.
por: Eren, A Murat
Publicado: (2025)

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress.
por: Veseli, Iva, et al.
Publicado: (2025)

gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs
por: Schmidt, Bertil, et al.
Publicado: (2024)

Microbial model communities exhibit widespread metabolic interdependencies.
por: Pacheco-Valenciana, Armando, et al.
Publicado: (2025)

Removal of sequencing adapter contamination improves microbial genome databases.
por: Moeller, Andrew H, et al.
Publicado: (2024)

A genome-scale metabolic reconstruction provides insight into the metabolism of the thermophilic bacterium Rhodothermus marinus.
por: Kristjansdottir, Thordis, et al.
Publicado: (2025)

AI ‐Smart Classroom for English Translation: An Adaptive HMM ‐Based Framework
por: Xibo Chen, et al.
Publicado: (2026)

Serum metabolic and microbial profiling yields insights into promoting effect of tryptophan‐related metabolites for health longevity in centenarians
por: Xiaorou Qiu, et al.
Publicado: (2025)

Age‐related macular degeneration discordance in monozygotic twin pairs
por: Fabian Kananen, et al.
Publicado: (2024)

A transfer RNA inosine modification drives genome-wide synonymous recoding across human commensal bacterial families.
por: Katanski, Christopher D, et al.
Publicado: (2026)

Robust microbial interactions, not diversity, dominate metabolic thermal adjustment following decadal warming in a subtropical forest.
por: Liu, Xujun, et al.
Publicado: (2025)

HMM-LSTM Fusion Model for Economic Forecasting
por: Sivakumar, Guhan
Publicado: (2025)

Reservoir Computing-Based Detection for Molecular Communications
por: Bilge, Abdulkadir, et al.
Publicado: (2025)

Into the metabolic wild: Unveiling hidden pathways of microbial metabolism
por: Özge Ata, et al.
Publicado: (2024)

Chromosome-level genome provides novel insights into the starch metabolism regulation and evolutionary history of Tetraselmis helgolandica.
por: Zhou, Zuodong, et al.
Publicado: (2026)

Comparative genomics provides insights into molecular adaptation to hypermetamorphosis and cantharidin metabolism in blister beetles (Coleoptera: Meloidae)
por: Alessandra RICCIERI, et al.
Publicado: (2024)

α-HMM: A Graphical Model for RNA Folding
por: Zhang, Sixiang, et al.
Publicado: (2024)

Geochemical variability and microbial metabolic functions in oligotrophic sediments exposed to minor seepage.
por: Schnabel, Ellen, et al.
Publicado: (2025)

Main effects of ascorbic acid levels and organic acid type on physicochemical properties, microbial populations, texture, and biogenic amine formation in sucuk
por: Gülsüme Bıçakcı, et al.
Publicado: (2026)

GlobDB: A comprehensive species-dereplicated microbial genome resource
por: Speth, Daan R., et al.
Publicado: (2025)

Positional Biases Shift as Inputs Approach Context Window Limits
por: Veseli, Blerta, et al.
Publicado: (2025)

Mechanistic insights into plant community responses to environmental variables: genome size, cellular nutrient investments, and metabolic tradeoffs
por: Erika I. Hersch‐Green, et al.
Publicado: (2024)

An insight on energy production using microbial fuel cell: A microbiological perspective and electron transfer improvement
por: Priya Dharshini Palanivel, et al.
Publicado: (2024)

Comparative genomics identifies key adaptive traits of sponge‐associated microbial symbionts
por: Paul A. O'Brien, et al.
Publicado: (2024)

Evolutionary and functional relationships between plant and microbial C1 metabolism in terrestrial ecosystems
por: Kolby J. Jardine, et al.
Publicado: (2025)

Syllable based DNN-HMM Cantonese Speech to Text System
por: Wong, Timothy, et al.
Publicado: (2024)

A Simple HMM with Self-Supervised Representations for Phone Segmentation
por: Yang, Gene-Ping, et al.
Publicado: (2024)

Phylogenomics of Bryopsidales and the significance of genome duplication in multinucleate cells
por: Quinten Bafort
Publicado: (2026)

Is 3D chip technology the next growth engine for performance improvement?
por: Emma, Philip, et al.
Publicado: (2024)

On color adjustment potential and color blending threshold of dental composite resins
por: Zs. M. Kovacs‐Vajna, et al.
Publicado: (2024)

Telomere‐to‐telomere genome assembly of linseed (Linum usitatissimum L.) for functional genomics and accelerated genetic improvement
por: Hemant Kumar Yadav, et al.
Publicado: (2025)

Eco‐evolutionary insights into microbial litter decomposition
por: Siya Shao, et al.
Publicado: (2024)

Choosing alpha post hoc: the danger of multiple standard significance thresholds
por: Hemerik, Jesse, et al.
Publicado: (2024)

Defining metabolic niches for marine microbial heterotrophs.
por: Reynolds, Ryan C, et al.
Publicado: (2026)

Organic management improved the multifunctionality in recolonization soil by increasing microbial diversity and function
por: Taobing Yu, et al.
Publicado: (2024)

A statistical significance test for spatio-temporal receptive field estimates obtained using spike-triggered averaging of binary pseudo-random sequences
por: Okatan, Murat
Publicado: (2024)

Improving genome-scale metabolic models of incomplete genomes with deep learning.
por: Boer, Meine D, et al.
Publicado: (2024)

Efficient Surgical Tool Recognition via HMM-Stabilized Deep Learning
por: Wang, Haifeng, et al.
Publicado: (2024)

HMM for short independent sequences: Multiple sequence Baum-Welch application
por: Cabrera-Bean, Margarita, et al.
Publicado: (2025)