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Main Authors:	Yoo, DongAhn, Rhie, Arang, Hebbar, Prajna, Antonacci, Francesca, Logsdon, Glennis A, Solar, Steven J, Antipov, Dmitry, Pickett, Brandon D, Safonova, Yana, Montinaro, Francesco, Luo, Yanting, Malukiewicz, Joanna, Storer, Jessica M, Lin, Jiadong, Sequeira, Abigail N, Mangan, Riley J, Hickey, Glenn, Monfort Anez, Graciela, Balachandran, Parithi, Bankevich, Anton, Beck, Christine R, Biddanda, Arjun, Borchers, Matthew, Bouffard, Gerard G, Brannan, Emry, Brooks, Shelise Y, Carbone, Lucia, Carrel, Laura, Chan, Agnes P, Crawford, Juyun, Diekhans, Mark, Engelbrecht, Eric, Feschotte, Cedric, Formenti, Giulio, Garcia, Gage H, de Gennaro, Luciana, Gilbert, David, Green, Richard E, Guarracino, Andrea, Gupta, Ishaan, Haddad, Diana, Han, Junmin, Harris, Robert S, Hartley, Gabrielle A, Harvey, William T, Hiller, Michael, Hoekzema, Kendra, Houck, Marlys L, Jeong, Hyeonsoo, Kamali, Kaivan, Kellis, Manolis, Kille, Bryce, Lee, Chul, Lee, Youngho, Lees, William, Lewis, Alexandra P, Li, Qiuhui, Loftus, Mark, Loh, Yong Hwee Eddie, Loucks, Hailey, Ma, Jian, Mao, Yafei, Martinez, Juan F I, Masterson, Patrick, McCoy, Rajiv C, McGrath, Barbara, McKinney, Sean, Meyer, Britta S, Miga, Karen H, Mohanty, Saswat K, Munson, Katherine M, Pal, Karol, Pennell, Matt, Pevzner, Pavel A, Porubsky, David, Potapova, Tamara, Ringeling, Francisca R, Rocha, Joana L, Ryder, Oliver A, Sacco, Samuel, Saha, Swati, Sasaki, Takayo, Schatz, Michael C, Schork, Nicholas J, Shanks, Cole, Smeds, Linnéa, Son, Dongmin R, Steiner, Cynthia, Sweeten, Alexander P, Tassia, Michael G, Thibaud-Nissen, Françoise, Torres-González, Edmundo, Trivedi, Mihir, Wei, Wenjie, Wertz, Julie, Yang, Muyu, Zhang, Panpan, Zhang, Shilong, Zhang, Yang, Zhang, Zhenmiao, Zhao, Sarah A, Zhu, Yixin, Jarvis, Erich D, Gerton, Jennifer L, Rivas-González, Iker, Paten, Benedict, Szpiech, Zachary A, Huber, Christian D, Lenz, Tobias L, Konkel, Miriam K, Yi, Soojin V, Canzar, Stefan, Watson, Corey T, Sudmant, Peter H, Molloy, Erin, Garrison, Erik, Lowe, Craig B, Ventura, Mario, O'Neill, Rachel J, Koren, Sergey, Makova, Kateryna D, Phillippy, Adam M, Eichler, Evan E
Format:	Artículo científico
Language:	en
Published:	Nature 2025
Subjects:	Animals Humans Centromere Chromosomes, Mammalian Evolution, Molecular Genome Gorilla gorilla Haplotypes Heterochromatin Hominidae Pan paniscus Pan troglodytes Phylogeny Segmental Duplications, Genomic Telomere Whole Genome Sequencing
Online Access:	https://pubmed.ncbi.nlm.nih.gov/40205052/
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author	Yoo, DongAhn Rhie, Arang Hebbar, Prajna Antonacci, Francesca Logsdon, Glennis A Solar, Steven J Antipov, Dmitry Pickett, Brandon D Safonova, Yana Montinaro, Francesco Luo, Yanting Malukiewicz, Joanna Storer, Jessica M Lin, Jiadong Sequeira, Abigail N Mangan, Riley J Hickey, Glenn Monfort Anez, Graciela Balachandran, Parithi Bankevich, Anton Beck, Christine R Biddanda, Arjun Borchers, Matthew Bouffard, Gerard G Brannan, Emry Brooks, Shelise Y Carbone, Lucia Carrel, Laura Chan, Agnes P Crawford, Juyun Diekhans, Mark Engelbrecht, Eric Feschotte, Cedric Formenti, Giulio Garcia, Gage H de Gennaro, Luciana Gilbert, David Green, Richard E Guarracino, Andrea Gupta, Ishaan Haddad, Diana Han, Junmin Harris, Robert S Hartley, Gabrielle A Harvey, William T Hiller, Michael Hoekzema, Kendra Houck, Marlys L Jeong, Hyeonsoo Kamali, Kaivan Kellis, Manolis Kille, Bryce Lee, Chul Lee, Youngho Lees, William Lewis, Alexandra P Li, Qiuhui Loftus, Mark Loh, Yong Hwee Eddie Loucks, Hailey Ma, Jian Mao, Yafei Martinez, Juan F I Masterson, Patrick McCoy, Rajiv C McGrath, Barbara McKinney, Sean Meyer, Britta S Miga, Karen H Mohanty, Saswat K Munson, Katherine M Pal, Karol Pennell, Matt Pevzner, Pavel A Porubsky, David Potapova, Tamara Ringeling, Francisca R Rocha, Joana L Ryder, Oliver A Sacco, Samuel Saha, Swati Sasaki, Takayo Schatz, Michael C Schork, Nicholas J Shanks, Cole Smeds, Linnéa Son, Dongmin R Steiner, Cynthia Sweeten, Alexander P Tassia, Michael G Thibaud-Nissen, Françoise Torres-González, Edmundo Trivedi, Mihir Wei, Wenjie Wertz, Julie Yang, Muyu Zhang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhao, Sarah A Zhu, Yixin Jarvis, Erich D Gerton, Jennifer L Rivas-González, Iker Paten, Benedict Szpiech, Zachary A Huber, Christian D Lenz, Tobias L Konkel, Miriam K Yi, Soojin V Canzar, Stefan Watson, Corey T Sudmant, Peter H Molloy, Erin Garrison, Erik Lowe, Craig B Ventura, Mario O'Neill, Rachel J Koren, Sergey Makova, Kateryna D Phillippy, Adam M Eichler, Evan E
author_facet	Yoo, DongAhn Rhie, Arang Hebbar, Prajna Antonacci, Francesca Logsdon, Glennis A Solar, Steven J Antipov, Dmitry Pickett, Brandon D Safonova, Yana Montinaro, Francesco Luo, Yanting Malukiewicz, Joanna Storer, Jessica M Lin, Jiadong Sequeira, Abigail N Mangan, Riley J Hickey, Glenn Monfort Anez, Graciela Balachandran, Parithi Bankevich, Anton Beck, Christine R Biddanda, Arjun Borchers, Matthew Bouffard, Gerard G Brannan, Emry Brooks, Shelise Y Carbone, Lucia Carrel, Laura Chan, Agnes P Crawford, Juyun Diekhans, Mark Engelbrecht, Eric Feschotte, Cedric Formenti, Giulio Garcia, Gage H de Gennaro, Luciana Gilbert, David Green, Richard E Guarracino, Andrea Gupta, Ishaan Haddad, Diana Han, Junmin Harris, Robert S Hartley, Gabrielle A Harvey, William T Hiller, Michael Hoekzema, Kendra Houck, Marlys L Jeong, Hyeonsoo Kamali, Kaivan Kellis, Manolis Kille, Bryce Lee, Chul Lee, Youngho Lees, William Lewis, Alexandra P Li, Qiuhui Loftus, Mark Loh, Yong Hwee Eddie Loucks, Hailey Ma, Jian Mao, Yafei Martinez, Juan F I Masterson, Patrick McCoy, Rajiv C McGrath, Barbara McKinney, Sean Meyer, Britta S Miga, Karen H Mohanty, Saswat K Munson, Katherine M Pal, Karol Pennell, Matt Pevzner, Pavel A Porubsky, David Potapova, Tamara Ringeling, Francisca R Rocha, Joana L Ryder, Oliver A Sacco, Samuel Saha, Swati Sasaki, Takayo Schatz, Michael C Schork, Nicholas J Shanks, Cole Smeds, Linnéa Son, Dongmin R Steiner, Cynthia Sweeten, Alexander P Tassia, Michael G Thibaud-Nissen, Françoise Torres-González, Edmundo Trivedi, Mihir Wei, Wenjie Wertz, Julie Yang, Muyu Zhang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhao, Sarah A Zhu, Yixin Jarvis, Erich D Gerton, Jennifer L Rivas-González, Iker Paten, Benedict Szpiech, Zachary A Huber, Christian D Lenz, Tobias L Konkel, Miriam K Yi, Soojin V Canzar, Stefan Watson, Corey T Sudmant, Peter H Molloy, Erin Garrison, Erik Lowe, Craig B Ventura, Mario O'Neill, Rachel J Koren, Sergey Makova, Kateryna D Phillippy, Adam M Eichler, Evan E Yoo, DongAhn Rhie, Arang Hebbar, Prajna Antonacci, Francesca Logsdon, Glennis A Solar, Steven J Antipov, Dmitry Pickett, Brandon D Safonova, Yana Montinaro, Francesco Luo, Yanting Malukiewicz, Joanna Storer, Jessica M Lin, Jiadong Sequeira, Abigail N Mangan, Riley J Hickey, Glenn Monfort Anez, Graciela Balachandran, Parithi Bankevich, Anton Beck, Christine R Biddanda, Arjun Borchers, Matthew Bouffard, Gerard G Brannan, Emry Brooks, Shelise Y Carbone, Lucia Carrel, Laura Chan, Agnes P Crawford, Juyun Diekhans, Mark Engelbrecht, Eric Feschotte, Cedric Formenti, Giulio Garcia, Gage H de Gennaro, Luciana Gilbert, David Green, Richard E Guarracino, Andrea Gupta, Ishaan Haddad, Diana Han, Junmin Harris, Robert S Hartley, Gabrielle A Harvey, William T Hiller, Michael Hoekzema, Kendra Houck, Marlys L Jeong, Hyeonsoo Kamali, Kaivan Kellis, Manolis Kille, Bryce Lee, Chul Lee, Youngho Lees, William Lewis, Alexandra P Li, Qiuhui Loftus, Mark Loh, Yong Hwee Eddie Loucks, Hailey Ma, Jian Mao, Yafei Martinez, Juan F I Masterson, Patrick McCoy, Rajiv C McGrath, Barbara McKinney, Sean Meyer, Britta S Miga, Karen H Mohanty, Saswat K Munson, Katherine M Pal, Karol Pennell, Matt Pevzner, Pavel A Porubsky, David Potapova, Tamara Ringeling, Francisca R Rocha, Joana L Ryder, Oliver A Sacco, Samuel Saha, Swati Sasaki, Takayo Schatz, Michael C Schork, Nicholas J Shanks, Cole Smeds, Linnéa Son, Dongmin R Steiner, Cynthia Sweeten, Alexander P Tassia, Michael G Thibaud-Nissen, Françoise Torres-González, Edmundo Trivedi, Mihir Wei, Wenjie Wertz, Julie Yang, Muyu Zhang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhao, Sarah A Zhu, Yixin Jarvis, Erich D Gerton, Jennifer L Rivas-González, Iker Paten, Benedict Szpiech, Zachary A Huber, Christian D Lenz, Tobias L Konkel, Miriam K Yi, Soojin V Canzar, Stefan Watson, Corey T Sudmant, Peter H Molloy, Erin Garrison, Erik Lowe, Craig B Ventura, Mario O'Neill, Rachel J Koren, Sergey Makova, Kateryna D Phillippy, Adam M Eichler, Evan E
collection	PubMed - marine biology
contents	Complete sequencing of ape genomes. Yoo, DongAhn Rhie, Arang Hebbar, Prajna Antonacci, Francesca Logsdon, Glennis A Solar, Steven J Antipov, Dmitry Pickett, Brandon D Safonova, Yana Montinaro, Francesco Luo, Yanting Malukiewicz, Joanna Storer, Jessica M Lin, Jiadong Sequeira, Abigail N Mangan, Riley J Hickey, Glenn Monfort Anez, Graciela Balachandran, Parithi Bankevich, Anton Beck, Christine R Biddanda, Arjun Borchers, Matthew Bouffard, Gerard G Brannan, Emry Brooks, Shelise Y Carbone, Lucia Carrel, Laura Chan, Agnes P Crawford, Juyun Diekhans, Mark Engelbrecht, Eric Feschotte, Cedric Formenti, Giulio Garcia, Gage H de Gennaro, Luciana Gilbert, David Green, Richard E Guarracino, Andrea Gupta, Ishaan Haddad, Diana Han, Junmin Harris, Robert S Hartley, Gabrielle A Harvey, William T Hiller, Michael Hoekzema, Kendra Houck, Marlys L Jeong, Hyeonsoo Kamali, Kaivan Kellis, Manolis Kille, Bryce Lee, Chul Lee, Youngho Lees, William Lewis, Alexandra P Li, Qiuhui Loftus, Mark Loh, Yong Hwee Eddie Loucks, Hailey Ma, Jian Mao, Yafei Martinez, Juan F I Masterson, Patrick McCoy, Rajiv C McGrath, Barbara McKinney, Sean Meyer, Britta S Miga, Karen H Mohanty, Saswat K Munson, Katherine M Pal, Karol Pennell, Matt Pevzner, Pavel A Porubsky, David Potapova, Tamara Ringeling, Francisca R Rocha, Joana L Ryder, Oliver A Sacco, Samuel Saha, Swati Sasaki, Takayo Schatz, Michael C Schork, Nicholas J Shanks, Cole Smeds, Linnéa Son, Dongmin R Steiner, Cynthia Sweeten, Alexander P Tassia, Michael G Thibaud-Nissen, Françoise Torres-González, Edmundo Trivedi, Mihir Wei, Wenjie Wertz, Julie Yang, Muyu Zhang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhao, Sarah A Zhu, Yixin Jarvis, Erich D Gerton, Jennifer L Rivas-González, Iker Paten, Benedict Szpiech, Zachary A Huber, Christian D Lenz, Tobias L Konkel, Miriam K Yi, Soojin V Canzar, Stefan Watson, Corey T Sudmant, Peter H Molloy, Erin Garrison, Erik Lowe, Craig B Ventura, Mario O'Neill, Rachel J Koren, Sergey Makova, Kateryna D Phillippy, Adam M Eichler, Evan E Animals Humans Centromere Chromosomes, Mammalian Evolution, Molecular Genome Gorilla gorilla Haplotypes Heterochromatin Hominidae Pan paniscus Pan troglodytes Phylogeny Segmental Duplications, Genomic Telomere Whole Genome Sequencing The most dynamic and repetitive regions of great ape genomes have traditionally been excluded from comparative studies. Consequently, our understanding of the evolution of our species is incomplete. Here we present haplotype-resolved reference genomes and comparative analyses of six ape species: chimpanzee, bonobo, gorilla, Bornean orangutan, Sumatran orangutan and siamang. We achieve chromosome-level contiguity with substantial sequence accuracy (
format	Artículo científico
id	pubmed_40205052
institution	PubMed
language	en
publishDate	2025
publisher	Nature
record_format	pubmed
spellingShingle	Complete sequencing of ape genomes. Yoo, DongAhn Rhie, Arang Hebbar, Prajna Antonacci, Francesca Logsdon, Glennis A Solar, Steven J Antipov, Dmitry Pickett, Brandon D Safonova, Yana Montinaro, Francesco Luo, Yanting Malukiewicz, Joanna Storer, Jessica M Lin, Jiadong Sequeira, Abigail N Mangan, Riley J Hickey, Glenn Monfort Anez, Graciela Balachandran, Parithi Bankevich, Anton Beck, Christine R Biddanda, Arjun Borchers, Matthew Bouffard, Gerard G Brannan, Emry Brooks, Shelise Y Carbone, Lucia Carrel, Laura Chan, Agnes P Crawford, Juyun Diekhans, Mark Engelbrecht, Eric Feschotte, Cedric Formenti, Giulio Garcia, Gage H de Gennaro, Luciana Gilbert, David Green, Richard E Guarracino, Andrea Gupta, Ishaan Haddad, Diana Han, Junmin Harris, Robert S Hartley, Gabrielle A Harvey, William T Hiller, Michael Hoekzema, Kendra Houck, Marlys L Jeong, Hyeonsoo Kamali, Kaivan Kellis, Manolis Kille, Bryce Lee, Chul Lee, Youngho Lees, William Lewis, Alexandra P Li, Qiuhui Loftus, Mark Loh, Yong Hwee Eddie Loucks, Hailey Ma, Jian Mao, Yafei Martinez, Juan F I Masterson, Patrick McCoy, Rajiv C McGrath, Barbara McKinney, Sean Meyer, Britta S Miga, Karen H Mohanty, Saswat K Munson, Katherine M Pal, Karol Pennell, Matt Pevzner, Pavel A Porubsky, David Potapova, Tamara Ringeling, Francisca R Rocha, Joana L Ryder, Oliver A Sacco, Samuel Saha, Swati Sasaki, Takayo Schatz, Michael C Schork, Nicholas J Shanks, Cole Smeds, Linnéa Son, Dongmin R Steiner, Cynthia Sweeten, Alexander P Tassia, Michael G Thibaud-Nissen, Françoise Torres-González, Edmundo Trivedi, Mihir Wei, Wenjie Wertz, Julie Yang, Muyu Zhang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhao, Sarah A Zhu, Yixin Jarvis, Erich D Gerton, Jennifer L Rivas-González, Iker Paten, Benedict Szpiech, Zachary A Huber, Christian D Lenz, Tobias L Konkel, Miriam K Yi, Soojin V Canzar, Stefan Watson, Corey T Sudmant, Peter H Molloy, Erin Garrison, Erik Lowe, Craig B Ventura, Mario O'Neill, Rachel J Koren, Sergey Makova, Kateryna D Phillippy, Adam M Eichler, Evan E Animals Humans Centromere Chromosomes, Mammalian Evolution, Molecular Genome Gorilla gorilla Haplotypes Heterochromatin Hominidae Pan paniscus Pan troglodytes Phylogeny Segmental Duplications, Genomic Telomere Whole Genome Sequencing Complete sequencing of ape genomes. Yoo, DongAhn Rhie, Arang Hebbar, Prajna Antonacci, Francesca Logsdon, Glennis A Solar, Steven J Antipov, Dmitry Pickett, Brandon D Safonova, Yana Montinaro, Francesco Luo, Yanting Malukiewicz, Joanna Storer, Jessica M Lin, Jiadong Sequeira, Abigail N Mangan, Riley J Hickey, Glenn Monfort Anez, Graciela Balachandran, Parithi Bankevich, Anton Beck, Christine R Biddanda, Arjun Borchers, Matthew Bouffard, Gerard G Brannan, Emry Brooks, Shelise Y Carbone, Lucia Carrel, Laura Chan, Agnes P Crawford, Juyun Diekhans, Mark Engelbrecht, Eric Feschotte, Cedric Formenti, Giulio Garcia, Gage H de Gennaro, Luciana Gilbert, David Green, Richard E Guarracino, Andrea Gupta, Ishaan Haddad, Diana Han, Junmin Harris, Robert S Hartley, Gabrielle A Harvey, William T Hiller, Michael Hoekzema, Kendra Houck, Marlys L Jeong, Hyeonsoo Kamali, Kaivan Kellis, Manolis Kille, Bryce Lee, Chul Lee, Youngho Lees, William Lewis, Alexandra P Li, Qiuhui Loftus, Mark Loh, Yong Hwee Eddie Loucks, Hailey Ma, Jian Mao, Yafei Martinez, Juan F I Masterson, Patrick McCoy, Rajiv C McGrath, Barbara McKinney, Sean Meyer, Britta S Miga, Karen H Mohanty, Saswat K Munson, Katherine M Pal, Karol Pennell, Matt Pevzner, Pavel A Porubsky, David Potapova, Tamara Ringeling, Francisca R Rocha, Joana L Ryder, Oliver A Sacco, Samuel Saha, Swati Sasaki, Takayo Schatz, Michael C Schork, Nicholas J Shanks, Cole Smeds, Linnéa Son, Dongmin R Steiner, Cynthia Sweeten, Alexander P Tassia, Michael G Thibaud-Nissen, Françoise Torres-González, Edmundo Trivedi, Mihir Wei, Wenjie Wertz, Julie Yang, Muyu Zhang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhao, Sarah A Zhu, Yixin Jarvis, Erich D Gerton, Jennifer L Rivas-González, Iker Paten, Benedict Szpiech, Zachary A Huber, Christian D Lenz, Tobias L Konkel, Miriam K Yi, Soojin V Canzar, Stefan Watson, Corey T Sudmant, Peter H Molloy, Erin Garrison, Erik Lowe, Craig B Ventura, Mario O'Neill, Rachel J Koren, Sergey Makova, Kateryna D Phillippy, Adam M Eichler, Evan E Animals Humans Centromere Chromosomes, Mammalian Evolution, Molecular Genome Gorilla gorilla Haplotypes Heterochromatin Hominidae Pan paniscus Pan troglodytes Phylogeny Segmental Duplications, Genomic Telomere Whole Genome Sequencing The most dynamic and repetitive regions of great ape genomes have traditionally been excluded from comparative studies. Consequently, our understanding of the evolution of our species is incomplete. Here we present haplotype-resolved reference genomes and comparative analyses of six ape species: chimpanzee, bonobo, gorilla, Bornean orangutan, Sumatran orangutan and siamang. We achieve chromosome-level contiguity with substantial sequence accuracy (
title	Complete sequencing of ape genomes.
topic	Animals Humans Centromere Chromosomes, Mammalian Evolution, Molecular Genome Gorilla gorilla Haplotypes Heterochromatin Hominidae Pan paniscus Pan troglodytes Phylogeny Segmental Duplications, Genomic Telomere Whole Genome Sequencing
url	https://pubmed.ncbi.nlm.nih.gov/40205052/

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