Cover Image

CAMI Benchmarking Portal: online evaluation and ranking of metagenomic software.

Fuente: PubMed

Saved in:

Bibliographic Details
Main Authors:	Meyer, Fernando, Robertson, Gary, Deng, Zhi-Luo, Koslicki, David, Gurevich, Alexey, McHardy, Alice C
Format:	Artículo científico
Language:	en
Published:	Nucleic acids research 2025
Subjects:	Software Metagenomics Benchmarking Metagenome Internet
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

35 metagenomic datasets from the northern and southern parts of the Yap trench sediments.
by: Niu, Mingyang, et al.
Published: (2026)

Benchmarking Cost-Effective DNA Extraction Kits for Diverse Metagenomic Samples.
by: Sobolev, Andrey, et al.
Published: (2025)

Benchmarking Differential Abundance Tests for 16S microbiome sequencing data using simulated data based on experimental templates.
by: Kohnert, Eva, et al.
Published: (2025)

A curated protein dataset for taxonomic classification of Prochlorococcus and Synechococcus in metagenomes.
by: Coe, Allison, et al.
Published: (2025)

Targeted analysis of metagenomes: divide and conquer.
by: Valmas, Marios I, et al.
Published: (2025)

Decoding mycobacterial ecology in Sub-Saharan African wastewater: metagenomic and metatranscriptomic insights for tuberculosis surveillance.
by: Mtetwa, Hlengiwe N, et al.
Published: (2026)

Metalog: curated and harmonised contextual data for global metagenomics samples.
by: Kuhn, Michael, et al.
Published: (2026)

Unearthing the genetic resources of Arabian sea seamount and metagenomic insights into phosphate cycling genes for next generation plant biostimulants.
by: Balachandran, Karpaga Raja Sundari, et al.
Published: (2025)

Metabarcoding and metagenomic data across aquatic environmental gradients along the coasts of France and Chile.
by: Maeke, Mara D, et al.
Published: (2026)

Low functional change despite high taxonomic turnover characterizes the microbiome across a 2000-km salinity gradient.
by: van der Loos, Luna M, et al.
Published: (2025)

From classification to confirmation: verifying taxonomic classifications by mapping metagenomic reads to reference genomes.
by: Wright, Robyn J, et al.
Published: (2026)

Metagenomics reveals spatial variation in cyanobacterial composition, function, and biosynthetic potential in the Winam Gulf, Lake Victoria, Kenya.
by: Hart, Lauren N, et al.
Published: (2025)

High microbial diversity, functional redundancy, and prophage enrichment support the success of the yellow pencil coral, in Curaçao's coral reefs.
by: Wallace, Bailey A, et al.
Published: (2025)

An Approach to Integrate Metagenomics, Metatranscriptomics and Metaproteomics Data in Public Data Resources.
by: Wang, Shengbo, et al.
Published: (2025)

Depth-driven decline in viral diversity unveils potential novel viruses in global deep-sea ecosystems.
by: Calderón-Osorno, Melany, et al.
Published: (2025)

Improving Whole Biodiversity Monitoring and Discovery With Environmental DNA Metagenomics.
by: Curto, Manuel, et al.
Published: (2025)

Environmental adaptations in metagenomes revealed by deep learning.
by: Winder, Johanna C, et al.
Published: (2025)

Quantifying antibiotic resistome risks across environmental niches: the L-ARRAP for long-read metagenomic profiling.
by: Li, Yongxin, et al.
Published: (2025)

Sulfated mannan of diatoms selects host-specific microbiota in the sunlit ocean.
by: Krull, J, et al.
Published: (2026)

Widespread distribution of bacteria containing PETases with a functional motif across global oceans.
by: Alam, Intikhab, et al.
Published: (2025)

in environmental studies is derived from human inputs.
by: Rahimlou, Saleh, et al.
Published: (2025)

Candidate Phyla Radiation (CPR) bacteria from hyperalkaline ecosystems provide novel insight into their symbiotic lifestyle and ecological implications.
by: He, Yu, et al.
Published: (2025)

Long-read nanopore shotgun metagenomic DNA sequencing for river biodiversity, wildlife, pollution, and environmental health monitoring.
by: Nousias, Orestis, et al.
Published: (2026)

Quantifying the contribution of the rare biosphere to natural disturbances.
by: Zhao, Jianshu, et al.
Published: (2025)

Ocean-M: an integrated global-scale multi-omics database for marine microbial diversity, function and ecological interactions.
by: Lv, Jia, et al.
Published: (2026)

Taxonomic and Functional Features of Surface to Deep-Sea Prokaryotic Communities in the Eastern North Pacific Ocean.
by: De Corte, Daniele, et al.
Published: (2025)

Giant viruses specific to deep oceans show persistent presence and activity.
by: Liu, Wenwen, et al.
Published: (2025)

Unbinned contigs expand known diversity in the global microbiome.
by: Prasoodanan Pk, Vishnu, et al.
Published: (2026)

Evidence of microbial reductive dehalogenation in deep-sea cold seeps and its implications for biogeochemical cycles.
by: Han, Yingchun, et al.
Published: (2025)

Metagenomic and Toxicological Data from a Study of Copper Nanoparticles in Oral Antisepsis
by: Machuca Ávila, David Esteban
Published: (2026)

High strain-level diversity of Bradyrhizobium across Australian soils.
by: Bueno de Mesquita, Clifton P, et al.
Published: (2025)

Promiscuous and genome-wide recombination underlies the sequence-discrete species of the SAR11 lineage in the deep ocean.
by: Zhao, Jianshu, et al.
Published: (2025)

Plastic degradation by enzymes from uncultured deep sea microorganisms.
by: Acosta, Daniel J, et al.
Published: (2025)

Culture-independent meta-pangenomics enabled by long-read metagenomics reveals associations with pediatric undernutrition.
by: Minich, Jeremiah J, et al.
Published: (2025)

nf-mucimmuno/dada2_16S
by: Macowan, Matthew, et al.
Published: (2025)

Establishing the ELIXIR Microbiome Community.
by: Finn, Robert D, et al.
Published: (2024)

Vertical stratification and metabolic versatility of methanogens in Haima cold seep sediments: Alkane-fueled acetoclastic methanogenesis revealed by metagenomics and experimental verification.
by: Jiang, Lijia, et al.
Published: (2026)

Nitrogen cycling during an Arctic bloom: from chemolithotrophy to nitrogen assimilation.
by: Laso-Pérez, Rafael, et al.
Published: (2025)

Cold seeps are potential hotspots of deep-sea nitrogen loss driven by microorganisms across 21 phyla.
by: Jiang, Qiuyun, et al.
Published: (2025)

Habitat-specificity in SAR11 is associated with a few genes under high selection.
by: Tucker, Sarah J, et al.
Published: (2025)