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| Format: | Artículo científico |
| Sprache: | en |
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Scientific data
2025
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| Online-Zugang: | https://pubmed.ncbi.nlm.nih.gov/40610501/ |
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| author | Chen, Che-Chun Hsu, Te-Hua Lu, Hsin-Yun Tang, Sen-Lin Ho, Ying-Ning |
| author_facet | Chen, Che-Chun Hsu, Te-Hua Lu, Hsin-Yun Tang, Sen-Lin Ho, Ying-Ning Chen, Che-Chun Hsu, Te-Hua Lu, Hsin-Yun Tang, Sen-Lin Ho, Ying-Ning |
| collection | PubMed - marine biology |
| contents | High-quality chromosome-level genome of three Meretrix species using Nanopore and Hi-C technologies. Chen, Che-Chun Hsu, Te-Hua Lu, Hsin-Yun Tang, Sen-Lin Ho, Ying-Ning Animals Bivalvia Chromosomes Genome Nanopore Sequencing Nanopores Datasets as Topic Meretrix is a commercially valuable bivalve genus in Asia, but only one reference genome has hindered comprehensive genetic studies and germplasm resource evaluation. In this study, we present three reference genomes of Meretrix species: Meretrix sp. MF1, Meretrix sp. MT1, and Meretrix lamarckii JML1. Meretrix sp. MF1 was assembled at the chromosome level using Nanopore sequencing and Hi-C technologies, whereas Meretrix sp. MT1 and Meretrix lamarckii were assembled as scaffold-level assemblies. The chromosome-level genome of Meretrix sp. MF1 consists of 36 contigs, including 19 chromosomes and 17 scaffolds, with a total length of 883.3 Mb and a scaffold N50 of 46.87 Mb. Notably, the genome of Meretrix sp. MF1, a putative novel species, exhibits an Average Nucleotide Identity (ANI) of 94.33% with its closest relative, Meretrix lamarckii. These genomic resources not only provide a crucial foundation for genetic research on Meretrix but also contribute to the development of effective conservation strategies for its sustainable management. |
| format | Artículo científico |
| id | pubmed_40610501 |
| institution | PubMed |
| language | en |
| publishDate | 2025 |
| publisher | Scientific data |
| record_format | pubmed |
| spellingShingle | High-quality chromosome-level genome of three Meretrix species using Nanopore and Hi-C technologies. Chen, Che-Chun Hsu, Te-Hua Lu, Hsin-Yun Tang, Sen-Lin Ho, Ying-Ning Animals Bivalvia Chromosomes Genome Nanopore Sequencing Nanopores Datasets as Topic High-quality chromosome-level genome of three Meretrix species using Nanopore and Hi-C technologies. Chen, Che-Chun Hsu, Te-Hua Lu, Hsin-Yun Tang, Sen-Lin Ho, Ying-Ning Animals Bivalvia Chromosomes Genome Nanopore Sequencing Nanopores Datasets as Topic Meretrix is a commercially valuable bivalve genus in Asia, but only one reference genome has hindered comprehensive genetic studies and germplasm resource evaluation. In this study, we present three reference genomes of Meretrix species: Meretrix sp. MF1, Meretrix sp. MT1, and Meretrix lamarckii JML1. Meretrix sp. MF1 was assembled at the chromosome level using Nanopore sequencing and Hi-C technologies, whereas Meretrix sp. MT1 and Meretrix lamarckii were assembled as scaffold-level assemblies. The chromosome-level genome of Meretrix sp. MF1 consists of 36 contigs, including 19 chromosomes and 17 scaffolds, with a total length of 883.3 Mb and a scaffold N50 of 46.87 Mb. Notably, the genome of Meretrix sp. MF1, a putative novel species, exhibits an Average Nucleotide Identity (ANI) of 94.33% with its closest relative, Meretrix lamarckii. These genomic resources not only provide a crucial foundation for genetic research on Meretrix but also contribute to the development of effective conservation strategies for its sustainable management. |
| title | High-quality chromosome-level genome of three Meretrix species using Nanopore and Hi-C technologies. |
| topic | Animals Bivalvia Chromosomes Genome Nanopore Sequencing Nanopores Datasets as Topic |
| url | https://pubmed.ncbi.nlm.nih.gov/40610501/ |