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| Formato: | Artículo científico |
| Lenguaje: | en |
| Publicado: |
Viruses
2025
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| Acceso en línea: | https://pubmed.ncbi.nlm.nih.gov/40872793/ |
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| author | Valouzi, Hajar Dizadji, Akbar Golnaraghi, Alireza Salami, Seyed Alireza Fontdevila Pareta, Nuria Önder, Serkan Selmi, Ilhem Rollin, Johan Berhal, Chadi Tamisier, Lucie Maclot, François Wang, Long Zhang, Rui Bahlolzada, Habibullah Lefeuvre, Pierre Massart, Sébastien |
| author_facet | Valouzi, Hajar Dizadji, Akbar Golnaraghi, Alireza Salami, Seyed Alireza Fontdevila Pareta, Nuria Önder, Serkan Selmi, Ilhem Rollin, Johan Berhal, Chadi Tamisier, Lucie Maclot, François Wang, Long Zhang, Rui Bahlolzada, Habibullah Lefeuvre, Pierre Massart, Sébastien Valouzi, Hajar Dizadji, Akbar Golnaraghi, Alireza Salami, Seyed Alireza Fontdevila Pareta, Nuria Önder, Serkan Selmi, Ilhem Rollin, Johan Berhal, Chadi Tamisier, Lucie Maclot, François Wang, Long Zhang, Rui Bahlolzada, Habibullah Lefeuvre, Pierre Massart, Sébastien |
| collection | PubMed - marine biology |
| contents | A Virome Scanning of Saffron ( L.) at the National Scale in Iran Using High-Throughput Sequencing Technologies. Valouzi, Hajar Dizadji, Akbar Golnaraghi, Alireza Salami, Seyed Alireza Fontdevila Pareta, Nuria Önder, Serkan Selmi, Ilhem Rollin, Johan Berhal, Chadi Tamisier, Lucie Maclot, François Wang, Long Zhang, Rui Bahlolzada, Habibullah Lefeuvre, Pierre Massart, Sébastien Crocus Iran High-Throughput Nucleotide Sequencing Phylogeny Plant Diseases Virome Genetic Variation Genome, Viral Potyvirus Geminiviridae Saffron ( L.) is a vegetatively propagated crop of high economic and cultural value, potentially affected by viral infections that may impact its productivity. Despite Iran's dominance in global saffron production, knowledge of its virome remains limited. In this study, we conducted the first nationwide virome survey of saffron in Iran employing a high-throughput sequencing (HTS) approach on pooled samples obtained from eleven provinces in Iran and one location in Afghanistan. Members of three virus families were detected- (), (), and ()-as well as one satellite from the family (). A novel , tentatively named saffron Iran virus (SaIRV) and detected in three provinces, shares less than 68% nucleotide identity with known Potyvirus species, thus meeting the ICTV criteria for designation as a new species. Genetic diversity analyses revealed substantial intrapopulation SNP variation but no clear geographical clustering. Among the two wild Crocus species sampled, only harbored turnip mosaic virus. Virome network and phylogenetic analyses confirmed widespread viral circulation likely driven by corm-mediated propagation. Our findings highlight the need for targeted certification programs and biological characterization of key viruses to mitigate potential impacts on saffron yield and quality. |
| format | Artículo científico |
| id | pubmed_40872793 |
| institution | PubMed |
| language | en |
| publishDate | 2025 |
| publisher | Viruses |
| record_format | pubmed |
| spellingShingle | A Virome Scanning of Saffron ( L.) at the National Scale in Iran Using High-Throughput Sequencing Technologies. Valouzi, Hajar Dizadji, Akbar Golnaraghi, Alireza Salami, Seyed Alireza Fontdevila Pareta, Nuria Önder, Serkan Selmi, Ilhem Rollin, Johan Berhal, Chadi Tamisier, Lucie Maclot, François Wang, Long Zhang, Rui Bahlolzada, Habibullah Lefeuvre, Pierre Massart, Sébastien Crocus Iran High-Throughput Nucleotide Sequencing Phylogeny Plant Diseases Virome Genetic Variation Genome, Viral Potyvirus Geminiviridae A Virome Scanning of Saffron ( L.) at the National Scale in Iran Using High-Throughput Sequencing Technologies. Valouzi, Hajar Dizadji, Akbar Golnaraghi, Alireza Salami, Seyed Alireza Fontdevila Pareta, Nuria Önder, Serkan Selmi, Ilhem Rollin, Johan Berhal, Chadi Tamisier, Lucie Maclot, François Wang, Long Zhang, Rui Bahlolzada, Habibullah Lefeuvre, Pierre Massart, Sébastien Crocus Iran High-Throughput Nucleotide Sequencing Phylogeny Plant Diseases Virome Genetic Variation Genome, Viral Potyvirus Geminiviridae Saffron ( L.) is a vegetatively propagated crop of high economic and cultural value, potentially affected by viral infections that may impact its productivity. Despite Iran's dominance in global saffron production, knowledge of its virome remains limited. In this study, we conducted the first nationwide virome survey of saffron in Iran employing a high-throughput sequencing (HTS) approach on pooled samples obtained from eleven provinces in Iran and one location in Afghanistan. Members of three virus families were detected- (), (), and ()-as well as one satellite from the family (). A novel , tentatively named saffron Iran virus (SaIRV) and detected in three provinces, shares less than 68% nucleotide identity with known Potyvirus species, thus meeting the ICTV criteria for designation as a new species. Genetic diversity analyses revealed substantial intrapopulation SNP variation but no clear geographical clustering. Among the two wild Crocus species sampled, only harbored turnip mosaic virus. Virome network and phylogenetic analyses confirmed widespread viral circulation likely driven by corm-mediated propagation. Our findings highlight the need for targeted certification programs and biological characterization of key viruses to mitigate potential impacts on saffron yield and quality. |
| title | A Virome Scanning of Saffron ( L.) at the National Scale in Iran Using High-Throughput Sequencing Technologies. |
| topic | Crocus Iran High-Throughput Nucleotide Sequencing Phylogeny Plant Diseases Virome Genetic Variation Genome, Viral Potyvirus Geminiviridae |
| url | https://pubmed.ncbi.nlm.nih.gov/40872793/ |