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Bibliographic Details
Main Authors:	Chang, Xinyao, Han, Wentao, Chen, Xiaomei, Tang, Caiyin, Wang, Danyang, Huang, Heng, Li, Yuli, Chen, Kai, Hu, Jingjie, Bao, Zhenmin, Chen, Hong, Wang, Shi
Format:	Artículo científico
Language:	en
Published:	Scientific data 2025
Subjects:	Animals Anthozoa Coral Reefs Genome Molecular Sequence Annotation
Online Access:	https://pubmed.ncbi.nlm.nih.gov/40877298/
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Genomes of the Caribbean reef-building corals Colpophyllia natans, Dendrogyra cylindrus, and Siderastrea siderea.
by: Locatelli, Nicolas S, et al.
Published: (2025)

Fireworms are a reservoir and potential vector for coral-infecting apicomplexans.
by: Bonacolta, Anthony M, et al.
Published: (2025)

Chromosome-Level Genome Assembly and Annotation of Corallium rubrum: A Mediterranean Coral Threatened by Overharvesting and Climate Change.
by: Ledoux, Jean-Baptiste, et al.
Published: (2025)

Plant genome assembly and annotation.
by: Michael, Todd P
Published: (2026)

Genome sequence of the Mediterranean red coral Corallium rubrum.
by: Ganot, Philippe, et al.
Published: (2024)

An improved chromosome-level genome assembly of a deep-sea limpet (Bathyacmaea lactea).
by: Chen, Dongsheng, et al.
Published: (2025)

Chromosome-level genome assembly and annotation of the spottedtail morwong (Cheilodactylus zonatus).
by: Chang, Mengyang, et al.
Published: (2025)

The chromosomal-level genome assembly and annotation of pen shell Atrina pectinata.
by: Li, Zhuanzhuan, et al.
Published: (2025)

Chromosome-level genome assembly and annotation of the tropical sea cucumber Holothuria fuscocinerea.
by: Wang, Xuan, et al.
Published: (2026)

Chromosome-scale genome assembly and annotation of the water monitor lizard, Varanus salvator.
by: Du, Yu, et al.
Published: (2026)

A high-quality Oxford Nanopore assembly of the hourglass dolphin (Lagenorhynchus cruciger) genome.
by: McGrath, Nick, et al.
Published: (2025)

Nuclear genome assembly and annotation for the phagotrophic green alga Nephroselmis pyriformis.
by: Charvet, Sophie, et al.
Published: (2025)

Chromosome-level genome assembly and annotation of Pampus argenteus and Pampus punctatissimus.
by: Zhu, Fei, et al.
Published: (2026)

Chromosome-level genome assembly and annotation of the camouflage grouper (Epinephelus polyphekadion).
by: Li, Haoyi, et al.
Published: (2024)

Chromosome-level genome assembly and annotation of the sharpsnout seabream (Diplodus puntazzo).
by: Pegueroles, Cinta, et al.
Published: (2025)

Chromosome-level genome assembly and annotation of a sea toad (Chaunax sp.).
by: Zhan, Zifeng, et al.
Published: (2024)

Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral.
by: Li, Kefan, et al.
Published: (2025)

Chromosome-level genome assembly and annotation of the emblematic silver-lipped pearl oyster Pinctada maxima Jameson 1901.
by: Benestan, L, et al.
Published: (2026)

sp. nov., sp. nov. and sp. nov. isolated from the coral on a reef in Kāne'ohe Bay, O'ahu, Hawai'i.
by: Thomas, Emily M, et al.
Published: (2025)

Genome assembly and annotation of a deep-diving pinniped, the northern elephant seal (Mirounga angustirostris).
by: Rivera, Milagros G, et al.
Published: (2026)

Genome assembly of Bougainvillia cf. muscus (Cnidaria: Hydrozoa).
by: Macias-Muñoz, Aide, et al.
Published: (2025)

Chromosome-level assembly and gene annotation of Kappaphycus striatus genome.
by: Zhou, Zhiyin, et al.
Published: (2025)

MolluscDB 2.0: a comprehensive functional and evolutionary genomics database for over 1400 molluscan species.
by: Liu, Fuyun, et al.
Published: (2025)

Progressive chronic tissue loss disease in Siderastrea siderea on Florida's coral reef.
by: Aeby, Greta Smith, et al.
Published: (2025)

Beyond Tubipora musica: Phylogenomics unveils the overlooked diversity and endemism of the hermatypic octocoral genus Tubipora.
by: Macrina, Laura, et al.
Published: (2026)

Resolving Symbiodiniaceae Diversity Across Coral Microhabitats and Reef Niches.
by: Million, Wyatt C, et al.
Published: (2025)

Bacterial and Symbiodiniaceae communities' variation in corals with distinct traits and geographical distribution.
by: Villela, Livia Bonetti, et al.
Published: (2024)

Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity.
by: Wiederkehr, Fabienne, et al.
Published: (2026)

Morphological traits and machine learning for genetic lineage prediction of two reef-building corals.
by: Mitushasi, Guinther, et al.
Published: (2025)

A genomic approach to Porites (Anthozoa: Scleractinia) megadiversity from the Indo-Pacific.
by: Terraneo, Tullia I, et al.
Published: (2025)

Chromosome-level genome assembly of scalloped spiny lobster Panulirus homarus homarus.
by: Sun, Dongfang, et al.
Published: (2025)

Annotated genome of the Atlantic dog whelk, Nucella lapillus.
by: Ford, Meghan R, et al.
Published: (2025)

A chromosome-level genome assembly of tropical purple sea urchin Heliocidaris crassispina.
by: Liu, Yang, et al.
Published: (2024)

Diversity and dynamics of multiple symbionts contribute to early development of broadcast spawning reef-building coral .
by: Guo, Minglan, et al.
Published: (2025)

gen. nov. sp. nov., a novel aerobic anoxygenic phototrophic bacteria isolated from reef-building coral.
by: Yan, Chang, et al.
Published: (2024)

Chromosome-level genome assembly of the doctor fish (Garra rufa).
by: Kon, Tetsuo, et al.
Published: (2025)

Mapping the relationship of reef structure and surfer spatial patterns at Cloudbreak, Fiji.
by: Kapono, Clifford A, et al.
Published: (2025)

A chromosomal-level genome assembly of the tropical sea cucumber Stichopus fusiformiossa.
by: Lau, Nyok-Sean, et al.
Published: (2025)

A clear distinction and presence of Acropora aff. divaricata within Acropora cf. solitaryensis species complex along their biogeographic distribution in East Asia.
by: Chow, Savanna Wenhua, et al.
Published: (2025)

if (filemtime($filename) + $maxlifetime < time()) { unlink($filename); $count++; } } return $count; } /** * A function that is called internally when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ protected function saveSession($sessId, $data): bool { $sessFile = $this->path . '/sess_' . $sessId; if ($handle = fopen($sessFile, 'w')) { $return = false; // Lock the file for exclusive access to avoid issues with multiple // processes writing session simultaneously: if (flock($handle, LOCK_EX)) { $return = fwrite($handle, $data); // Make sure that there's no trailing data by truncating the file to // the correct length: ftruncate($handle, strlen($data)); fflush($handle); flock($handle, LOCK_UN); } fclose($handle); if ($return !== false) { return true; } } // If we got this far, something went wrong with the file output... // It is tempting to throw an exception here, but this code is called // outside of the context of exception handling, so all we can do is // echo a message.

// Anecdotal testing Today and Yesterday seems to indicate destroy() // is called by the garbage collector and everything is good. // Something to keep in mind though. return 0; } /** * Write function that is called when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ public function write($sessId, $data): bool { if ($this->writesDisabled) { return true; } return $this->saveSession($sessId, $data); } /** * A function that is called internally when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ abstract protected function saveSession($sessId, $data): bool; }

* * @return void */ public function writeClose() { // The assumption is that we're using PHP's ext/session. // session_write_close() will actually overwrite $_SESSION with an // empty array on completion -- which leads to a mismatch between what // is in the storage object and $_SESSION. To get around this, we // temporarily reset $_SESSION to an array, and then re-link it to // the storage object. // // Additionally, while you _can_ write to $_SESSION following a // session_write_close() operation, no changes made to it will be // flushed to the session handler. As such, we now mark the storage // object isImmutable. $storage = $this->getStorage(); if (! $storage->isImmutable()) { $_SESSION = $storage->toArray(true); session_write_close(); $storage->fromArray($_SESSION); $storage->markImmutable(); } } /** * Attempt to set the session name * * If the session has already been started, or if the name provided fails * validation, an exception will be raised. * * @param string $name * @return SessionManager * @throws Exception\InvalidArgumentException */ public function setName($name) { if ($this->sessionExists()) { throw new Exception\InvalidArgumentException( 'Cannot set session name after a session has already started'

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