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| Main Authors: | , , , , , , , , |
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| Format: | Artículo científico |
| Language: | en |
| Published: |
Scientific data
2025
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| Subjects: | |
| Online Access: | https://pubmed.ncbi.nlm.nih.gov/41168247/ |
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| _version_ | 1868266132948910080 |
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| author | Li, Kefan Lin, Wei Zhou, Jiebin Liu, Chichi Syaifudin, Muhamad Huang, Jiahong Pei, Pengbing Du, Hong Li, Tangcheng |
| author_facet | Li, Kefan Lin, Wei Zhou, Jiebin Liu, Chichi Syaifudin, Muhamad Huang, Jiahong Pei, Pengbing Du, Hong Li, Tangcheng Li, Kefan Lin, Wei Zhou, Jiebin Liu, Chichi Syaifudin, Muhamad Huang, Jiahong Pei, Pengbing Du, Hong Li, Tangcheng |
| collection | PubMed - marine biology |
| contents | Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral. Li, Kefan Lin, Wei Zhou, Jiebin Liu, Chichi Syaifudin, Muhamad Huang, Jiahong Pei, Pengbing Du, Hong Li, Tangcheng Anthozoa Animals Vibrio Genome, Bacterial Urea Whole Genome Sequencing Vibrio species are recognized as potential causative agents of coral diseases, yet their metabolic capabilities concerning different nitrogen sources, such as urea, have been largely understudied. This study focuses on 18 urea-utilizing Vibrio strains isolated from coral, for which we performed complete genome sequencing using Illumina technology. The average assembled genome size was 5.67 Mb, with an average contig N50 of 0.61 Mb and scaffold N50 of 0.61 Mb. We predicted an average of 5,087 protein-coding genes per genome, with over 95% of these genes successfully annotated for function. Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis revealed an average 98.9% completeness for the Vibrio spp. lineage. Overall, this study provides high-quality genomic data for these Vibrio strains, offering a valuable resource for further research into their evolution, molecular mechanisms of pathogenicity, and their specific roles in the nitrogen cycle of the coral ecosystem. |
| format | Artículo científico |
| id | pubmed_41168247 |
| institution | PubMed |
| language | en |
| publishDate | 2025 |
| publisher | Scientific data |
| record_format | pubmed |
| spellingShingle | Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral. Li, Kefan Lin, Wei Zhou, Jiebin Liu, Chichi Syaifudin, Muhamad Huang, Jiahong Pei, Pengbing Du, Hong Li, Tangcheng Anthozoa Animals Vibrio Genome, Bacterial Urea Whole Genome Sequencing Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral. Li, Kefan Lin, Wei Zhou, Jiebin Liu, Chichi Syaifudin, Muhamad Huang, Jiahong Pei, Pengbing Du, Hong Li, Tangcheng Anthozoa Animals Vibrio Genome, Bacterial Urea Whole Genome Sequencing Vibrio species are recognized as potential causative agents of coral diseases, yet their metabolic capabilities concerning different nitrogen sources, such as urea, have been largely understudied. This study focuses on 18 urea-utilizing Vibrio strains isolated from coral, for which we performed complete genome sequencing using Illumina technology. The average assembled genome size was 5.67 Mb, with an average contig N50 of 0.61 Mb and scaffold N50 of 0.61 Mb. We predicted an average of 5,087 protein-coding genes per genome, with over 95% of these genes successfully annotated for function. Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis revealed an average 98.9% completeness for the Vibrio spp. lineage. Overall, this study provides high-quality genomic data for these Vibrio strains, offering a valuable resource for further research into their evolution, molecular mechanisms of pathogenicity, and their specific roles in the nitrogen cycle of the coral ecosystem. |
| title | Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral. |
| topic | Anthozoa Animals Vibrio Genome, Bacterial Urea Whole Genome Sequencing |
| url | https://pubmed.ncbi.nlm.nih.gov/41168247/ |